Package inra.ijpb.plugins

Class InteractiveMorphologicalReconstruction

java.lang.Object
inra.ijpb.plugins.InteractiveMorphologicalReconstruction
All Implemented Interfaces:
ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter
public class InteractiveMorphologicalReconstruction
extends java.lang.Object
implements ij.plugin.filter.ExtendedPlugInFilter, ij.gui.DialogListener
Plugin for performing interactive morphological reconstruction by dilation or by erosion on grayscale images. In contrast with the non-interactive plugin, the active image is considered the mask image, while the marker image is constructed by user-defined point ROIs. The marker image is used to initialize the reconstruction, and the mask image is used to constrain it. The connectivity can also be specified.
Author:
Ignacio Arganda-Carreras (ignacio.arganda@ehu.eus)

  • Field Summary

    Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

    KEEP_PREVIEW

    Fields inherited from interface ij.plugin.filter.PlugInFilter

    CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

  • Constructor Summary

    Constructors
    Constructor Description
    InteractiveMorphologicalReconstruction()  

  • Method Summary

    Modifier and Type Method Description
    boolean dialogItemChanged​(ij.gui.GenericDialog gd, java.awt.AWTEvent evt)
    Called when a dialog widget has been modified: recomputes option values from dialog content.
    void run​(ij.process.ImageProcessor image)
    Apply the current filter settings to process the given image.
    void setNPasses​(int nPasses)  
    int setup​(java.lang.String arg, ij.ImagePlus imp)
    Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
    int showDialog​(ij.ImagePlus imp, java.lang.String command, ij.plugin.filter.PlugInFilterRunner pfr)  

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • InteractiveMorphologicalReconstruction

      public InteractiveMorphologicalReconstruction()

  • Method Details

    • setup

      public int setup​(java.lang.String arg, ij.ImagePlus imp)
      Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
      Specified by:
      setup in interface ij.plugin.filter.PlugInFilter

    • showDialog

      public int showDialog​(ij.ImagePlus imp, java.lang.String command, ij.plugin.filter.PlugInFilterRunner pfr)
      Specified by:
      showDialog in interface ij.plugin.filter.ExtendedPlugInFilter

    • dialogItemChanged

      public boolean dialogItemChanged​(ij.gui.GenericDialog gd, java.awt.AWTEvent evt)
      Called when a dialog widget has been modified: recomputes option values from dialog content.
      Specified by:
      dialogItemChanged in interface ij.gui.DialogListener

    • setNPasses

      public void setNPasses​(int nPasses)
      Specified by:
      setNPasses in interface ij.plugin.filter.ExtendedPlugInFilter

    • run

      public void run​(ij.process.ImageProcessor image)
      Apply the current filter settings to process the given image.
      Specified by:
      run in interface ij.plugin.filter.PlugInFilter