Package inra.ijpb.binary.geodesic

Class GeodesicDistanceTransformShort

java.lang.Object
inra.ijpb.algo.AlgoStub
inra.ijpb.binary.geodesic.GeodesicDistanceTransformShort
All Implemented Interfaces:
Algo, GeodesicDistanceTransform
public class GeodesicDistanceTransformShort
extends AlgoStub
implements GeodesicDistanceTransform
Computation of geodesic distances based on a chamfer mask using short integer array for storing result. The maximum propagated distance is limited to Short.MAX_VALUE. All computations are performed using integers, results are stored as shorts. This implementation is based on iteration of forward-backward passes, until idempotence. The "hybrid" implementation is usually more efficient for complex images.
Author:
David Legland
See Also:
GeodesicDistanceTransformShortHybrid, GeodesicDistanceTransformFloat

  • Field Summary

    Fields
    Modifier and Type Field Description
    static short BACKGROUND
    The value associated to the background in the result image.
    static short MAX_DIST
    The value used to initialize the distance map.

  • Constructor Summary

    Constructors
    Constructor Description
    GeodesicDistanceTransformShort​(short[] weights)
    Deprecated.
    should use an instance of ChamferMask2D at construction
    GeodesicDistanceTransformShort​(short[] weights, boolean normalizeMap)
    Deprecated.
    should use an instance of ChamferMask2D at construction
    GeodesicDistanceTransformShort​(ChamferMask2D mask)
    Creates a new algorithm for propagating geodesic distances.
    GeodesicDistanceTransformShort​(ChamferMask2D mask, boolean normalizeMap)
    Creates a new algorithm for propagating geodesic distances.

  • Method Summary

    Modifier and Type Method Description
    ij.process.ImageProcessor geodesicDistanceMap​(ij.process.ImageProcessor marker, ij.process.ImageProcessor labelImage)
    Computes the geodesic distance function for each pixel in mask label image, using the given binary marker image.

    Methods inherited from class inra.ijpb.algo.AlgoStub

    addAlgoListener, removeAlgoListener

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface inra.ijpb.algo.Algo

    addAlgoListener, removeAlgoListener

  • Field Details

    • MAX_DIST

      public static final short MAX_DIST
      The value used to initialize the distance map.
      See Also:
      Constant Field Values

    • BACKGROUND

      public static final short BACKGROUND
      The value associated to the background in the result image.
      See Also:
      Constant Field Values

  • Constructor Details

    • GeodesicDistanceTransformShort

      public GeodesicDistanceTransformShort​(ChamferMask2D mask)
      Creates a new algorithm for propagating geodesic distances.
      Parameters:
      mask - the chamfer mask to use for propagating distances

    • GeodesicDistanceTransformShort

      public GeodesicDistanceTransformShort​(ChamferMask2D mask, boolean normalizeMap)
      Creates a new algorithm for propagating geodesic distances.
      Parameters:
      mask - the chamfer mask to use for propagating distances
      normalizeMap - the flag for normalization

    • GeodesicDistanceTransformShort

      @Deprecated public GeodesicDistanceTransformShort​(short[] weights)
      Deprecated.
      should use an instance of ChamferMask2D at construction
      Creates a new algorithm for propagating geodesic distances.
      Parameters:
      weights - the weights to use for propagating distances

    • GeodesicDistanceTransformShort

      @Deprecated public GeodesicDistanceTransformShort​(short[] weights, boolean normalizeMap)
      Deprecated.
      should use an instance of ChamferMask2D at construction
      Creates a new algorithm for propagating geodesic distances.
      Parameters:
      weights - the weights to use for propagating distances
      normalizeMap - the flag for normalization

  • Method Details

    • geodesicDistanceMap

      public ij.process.ImageProcessor geodesicDistanceMap​(ij.process.ImageProcessor marker, ij.process.ImageProcessor labelImage)
      Computes the geodesic distance function for each pixel in mask label image, using the given binary marker image. Mask and marker should be ImageProcessor the same size and containing integer values. The function returns a new ShortProcessor the same size as the input, with values greater or equal to zero.
      Specified by:
      geodesicDistanceMap in interface GeodesicDistanceTransform
      Parameters:
      marker - the binary marker image
      labelImage - the label image used as mask
      Returns:
      the geodesic distance map from the marker image within each label of the mask
      See Also:
      GeodesicDistanceTransform.geodesicDistanceMap(ij.process.ImageProcessor, ij.process.ImageProcessor)