Package inra.ijpb.label.distmap

Class DistanceTransform3DShort

java.lang.Object
inra.ijpb.algo.AlgoStub
inra.ijpb.label.distmap.DistanceTransform3DShort
All Implemented Interfaces:
Algo, DistanceTransform3D
@Deprecated
public class DistanceTransform3DShort
extends AlgoStub
implements DistanceTransform3D
Deprecated.
replaced by ChamferDistanceTransform3DShort (since 1.4.4)
Computes Chamfer distances in a 3x3x3 neighborhood and storing result in 16-bits image. In practice, computations are done with integers, but result is stored in a 3D short image, thus requiring less memory than floating point.

  • Constructor Summary

    Constructors
    Constructor Description
    DistanceTransform3DShort​(short[] weights)
    Deprecated.
    Default constructor that specifies the chamfer weights.
    DistanceTransform3DShort​(short[] weights, boolean normalize)
    Deprecated.
    Constructor specifying the chamfer weights and the optional normalization.
    DistanceTransform3DShort​(ChamferWeights3D weights)
    Deprecated.
    Default constructor that specifies the chamfer weights.
    DistanceTransform3DShort​(ChamferWeights3D weights, boolean normalize)
    Deprecated.
    Constructor specifying the chamfer weights and the optional normalization.

  • Method Summary

    Modifier and Type Method Description
    ij.ImageStack distanceMap​(ij.ImageStack image)
    Deprecated.
    Computes the distance map from a 3D binary image.

    Methods inherited from class inra.ijpb.algo.AlgoStub

    addAlgoListener, removeAlgoListener

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface inra.ijpb.algo.Algo

    addAlgoListener, removeAlgoListener

  • Constructor Details

    • DistanceTransform3DShort

      public DistanceTransform3DShort​(ChamferWeights3D weights)
      Deprecated.
      Default constructor that specifies the chamfer weights.
      Parameters:
      weights - an array of two weights for orthogonal and diagonal directions

    • DistanceTransform3DShort

      public DistanceTransform3DShort​(short[] weights)
      Deprecated.
      Default constructor that specifies the chamfer weights.
      Parameters:
      weights - an array of two weights for orthogonal and diagonal directions

    • DistanceTransform3DShort

      public DistanceTransform3DShort​(ChamferWeights3D weights, boolean normalize)
      Deprecated.
      Constructor specifying the chamfer weights and the optional normalization.
      Parameters:
      weights - an array of two weights for orthogonal and diagonal directions
      normalize - flag indicating whether the final distance map should be normalized by the first weight

    • DistanceTransform3DShort

      public DistanceTransform3DShort​(short[] weights, boolean normalize)
      Deprecated.
      Constructor specifying the chamfer weights and the optional normalization.
      Parameters:
      weights - an array of two weights for orthogonal and diagonal directions
      normalize - flag indicating whether the final distance map should be normalized by the first weight

  • Method Details

    • distanceMap

      public ij.ImageStack distanceMap​(ij.ImageStack image)
      Deprecated.
      Computes the distance map from a 3D binary image. Distance is computed for each foreground (white) pixel, as the chamfer distance to the nearest background (black) pixel.
      Specified by:
      distanceMap in interface DistanceTransform3D
      Parameters:
      image - a 3D binary image with white pixels (255) as foreground
      Returns:
      a new 3D image containing:
      • 0 for each background pixel
      • the distance to the nearest background pixel otherwise