Package inra.ijpb.measure

Class IntensityMeasures

java.lang.Object
inra.ijpb.measure.LabeledVoxelsMeasure
inra.ijpb.measure.IntensityMeasures
public class IntensityMeasures
extends LabeledVoxelsMeasure
Class to facilitate the calculation of intensity measures by grouping together voxels belonging to the same label.
Author:
Ignacio Arganda-Carreras

  • Constructor Summary

    Constructors
    Constructor Description
    IntensityMeasures​(ij.ImagePlus inputImage, ij.ImagePlus labelImage)
    Initialize the measurements by reading the input (grayscale) image and its corresponding labels.

  • Method Summary

    Modifier and Type Method Description
    ij.measure.ResultsTable getKurtosis()
    Get kurtosis voxel values per label
    ij.measure.ResultsTable getMax()
    Get maximum voxel values per label
    ij.measure.ResultsTable getMean()
    Get mean voxel values per label
    ij.measure.ResultsTable getMedian()
    Get median voxel values per label
    ij.measure.ResultsTable getMin()
    Get minimum voxel values per label
    ij.measure.ResultsTable getMode()
    Get mode voxel values per label
    ij.measure.ResultsTable getNeighborsKurtosis()
    Get the intensity kurtosis values of the neighbor labels
    ij.measure.ResultsTable getNeighborsMax()
    Get the maximum intensity values of the neighbor labels
    ij.measure.ResultsTable getNeighborsMean()
    Get the mean intensity values of the neighbor labels
    ij.measure.ResultsTable getNeighborsMedian()
    Get the median intensity values of the neighbor labels
    ij.measure.ResultsTable getNeighborsMin()
    Get the minimum intensity values of the neighbor labels
    ij.measure.ResultsTable getNeighborsMode()
    Get the intensity mode value of the neighbor labels
    ij.measure.ResultsTable getNeighborsSkewness()
    Get the intensity skewness values of the neighbor labels
    ij.measure.ResultsTable getNeighborsStdDev()
    Get the standard deviation of the intensity values of the neighbor labels
    ij.measure.ResultsTable getSkewness()
    Get skewness voxel values per label
    ij.measure.ResultsTable getStdDev()
    Get standard deviation of voxel values per label

    Methods inherited from class inra.ijpb.measure.LabeledVoxelsMeasure

    getNumberOfVoxels, getSumOfVoxels, getVolume

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • IntensityMeasures

      public IntensityMeasures​(ij.ImagePlus inputImage, ij.ImagePlus labelImage)
      Initialize the measurements by reading the input (grayscale) image and its corresponding labels.
      Parameters:
      inputImage - input (grayscale) image
      labelImage - label image (labels are positive integer values)

  • Method Details

    • getMean

      public ij.measure.ResultsTable getMean()
      Get mean voxel values per label
      Returns:
      result table with mean values per label

    • getNeighborsMean

      public ij.measure.ResultsTable getNeighborsMean()
      Get the mean intensity values of the neighbor labels
      Returns:
      result table with mean values of neighbor labels

    • getMedian

      public ij.measure.ResultsTable getMedian()
      Get median voxel values per label
      Returns:
      result table with median values per label

    • getNeighborsMedian

      public ij.measure.ResultsTable getNeighborsMedian()
      Get the median intensity values of the neighbor labels
      Returns:
      result table with median values of neighbor labels

    • getMode

      public ij.measure.ResultsTable getMode()
      Get mode voxel values per label
      Returns:
      result table with mode values per label

    • getNeighborsMode

      public ij.measure.ResultsTable getNeighborsMode()
      Get the intensity mode value of the neighbor labels
      Returns:
      result table with intensity mode of neighbor labels

    • getSkewness

      public ij.measure.ResultsTable getSkewness()
      Get skewness voxel values per label
      Returns:
      result table with skewness values per label

    • getNeighborsSkewness

      public ij.measure.ResultsTable getNeighborsSkewness()
      Get the intensity skewness values of the neighbor labels
      Returns:
      result table with intensity skewness of neighbor labels

    • getKurtosis

      public ij.measure.ResultsTable getKurtosis()
      Get kurtosis voxel values per label
      Returns:
      result table with kurtosis values per label

    • getNeighborsKurtosis

      public ij.measure.ResultsTable getNeighborsKurtosis()
      Get the intensity kurtosis values of the neighbor labels
      Returns:
      result table with intensity kurtosis of neighbor labels

    • getStdDev

      public ij.measure.ResultsTable getStdDev()
      Get standard deviation of voxel values per label
      Returns:
      result table with standard deviation values per label

    • getNeighborsStdDev

      public ij.measure.ResultsTable getNeighborsStdDev()
      Get the standard deviation of the intensity values of the neighbor labels
      Returns:
      result table with standard deviation values of neighbor labels

    • getMax

      public ij.measure.ResultsTable getMax()
      Get maximum voxel values per label
      Returns:
      result table with maximum values per label

    • getNeighborsMax

      public ij.measure.ResultsTable getNeighborsMax()
      Get the maximum intensity values of the neighbor labels
      Returns:
      result table with maximum values of neighbor labels

    • getMin

      public ij.measure.ResultsTable getMin()
      Get minimum voxel values per label
      Returns:
      result table with minimum values per label

    • getNeighborsMin

      public ij.measure.ResultsTable getNeighborsMin()
      Get the minimum intensity values of the neighbor labels
      Returns:
      result table with minimum values of neighbor labels