Package inra.ijpb.measure.region3d

Class LargestInscribedBall

java.lang.Object
inra.ijpb.algo.AlgoStub
inra.ijpb.measure.region3d.RegionAnalyzer3D<Sphere>
inra.ijpb.measure.region3d.LargestInscribedBall
All Implemented Interfaces:
Algo, AlgoListener, RegionAnalyzer<Sphere>
public class LargestInscribedBall
extends RegionAnalyzer3D<Sphere>
Computes the largest inscribed ball for each region of a label or binary image.
Author:
dlegland
See Also:
LargestInscribedCircle

  • Constructor Summary

    Constructors
    Constructor Description
    LargestInscribedBall()
    Empty constructor.

  • Method Summary

    Modifier and Type Method Description
    Sphere[] analyzeRegions​(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib)
    Computes largest inscribed ball of each region with a 3D label image.
    ij.measure.ResultsTable createTable​(java.util.Map<java.lang.Integer,​Sphere> map)
    Utility method that transforms the mapping between labels and inscribed ball instances into a ResultsTable that can be displayed with ImageJ.
    static Sphere[] largestInscribedBalls​(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib)
    Computes largest inscribed ball of each region with a 3D label image.

    Methods inherited from class inra.ijpb.measure.region3d.RegionAnalyzer3D

    algoProgressChanged, algoStatusChanged, analyzeRegions, analyzeRegions, computeTable, createMap

    Methods inherited from class inra.ijpb.algo.AlgoStub

    addAlgoListener, removeAlgoListener

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • LargestInscribedBall

      public LargestInscribedBall()
      Empty constructor.

  • Method Details

    • largestInscribedBalls

      public static final Sphere[] largestInscribedBalls​(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib)
      Computes largest inscribed ball of each region with a 3D label image. The regions must be disjoint.
      Parameters:
      labelImage - the 3D input image containing label of particles
      labels - the set of labels within the image
      calib - the spatial calibration of the image
      Returns:
      an array of Sphere representing the inscribed balls of each region, in calibrated coordinates

    • createTable

      public ij.measure.ResultsTable createTable​(java.util.Map<java.lang.Integer,​Sphere> map)
      Utility method that transforms the mapping between labels and inscribed ball instances into a ResultsTable that can be displayed with ImageJ.
      Parameters:
      map - the mapping between labels and inscribed ball
      Returns:
      a ResultsTable that can be displayed with ImageJ.

    • analyzeRegions

      public Sphere[] analyzeRegions​(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib)
      Computes largest inscribed ball of each region with a 3D label image. The regions must be disjoint.
      Specified by:
      analyzeRegions in class RegionAnalyzer3D<Sphere>
      Parameters:
      labelImage - the 3D input image containing label of particles
      labels - the set of labels within the image
      calib - the spatial calibration of the image
      Returns:
      an array of Sphere representing the inscribed balls of each region, in calibrated coordinates