Uses of Class inra.ijpb.binary.distmap.ChamferMask3D

Packages that use ChamferMask3D
Package	Description
inra.ijpb.binary	Operators taking binary images as input, such as connected component labeling or distance maps.
inra.ijpb.binary.distmap	Computations of distance maps on binary images, using chamfer distances (integer approximation of Euclidean distances).
inra.ijpb.binary.geodesic	Algorithms for computing geodesic distances, geodesic diameters, tortuosity...
inra.ijpb.label	Utility methods for label images (stored as 8-, 16- or 32-bits).
inra.ijpb.label.distmap	Computation of distance maps for label images.
inra.ijpb.label.filter	Implementation of morphological filters for label images.
inra.ijpb.measure.region3d	Quantitative measurements on 3D label / binary images of regions.
inra.ijpb.morphology.strel	A collection of Structuring Element ("Strel") implementations for mathematical morphology.
inra.ijpb.plugins	Contains plugins, for integration with ImageJ GUI.

Uses of ChamferMask3D in inra.ijpb.binary

Methods in inra.ijpb.binary with parameters of type ChamferMask3D
Modifier and Type	Method	Description
`static ij.ImageStack`	BinaryImages.`distanceMap(ij.ImageStack image, ChamferMask3D chamferMask, boolean floatingPoint, boolean normalize)`	Computes the distance map from a binary 3D image.

Uses of ChamferMask3D in inra.ijpb.binary.distmap

Subclasses of ChamferMask3D in inra.ijpb.binary.distmap
Modifier and Type	Class	Description
`class`	`ChamferMask3DW3`	Implementation of Chamfer Weights for 3D images that manages three type offset types, corresponding to orthogonal, square-diagonal and cube-diagonal neighbors.
`class`	`ChamferMask3DW3Float`	Implementation of Chamfer Weights for 3D images that manages three types of offsets, corresponding to orthogonal, square-diagonal and cube-diagonal neighbors.
`class`	`ChamferMask3DW4`	Implementation of Chamfer Weights for 3D images that manages four types of offsets.
`class`	`ChamferMask3DW5`	Implementation of Chamfer Weights for 3D images that manages five types of offsets.
`class`	`ChamferMask3DW6`	Implementation of Chamfer Weights for 3D images that manages six types of offsets (all the possibilities in a 5-by-5-by-5 neighborhood).

Fields in inra.ijpb.binary.distmap declared as ChamferMask3D
Modifier and Type	Field	Description
`static ChamferMask3D`	ChamferMask3D.`BORGEFORS`	Use weights 3 for orthogonal neighbors, 4 for square-diagonal neighbors, and 5 for cube-diagonals (best approximation for 3-by-3-by-3 masks).
`static ChamferMask3D`	ChamferMask3D.`CHESSBOARD`	Use weights equal to 1 for all neighbors.
`static ChamferMask3D`	ChamferMask3D.`CITY_BLOCK`	Use weights 1 for orthogonal neighbors, 2 for square-diagonal neighbors, and 3 for cube-diagonals.
`static ChamferMask3D`	ChamferMask3D.`QUASI_EUCLIDEAN`	Use weights 1 for orthogonal neighbors, sqrt(2) for square-diagonal neighbors, and sqrt(3) for cube-diagonals.
`static ChamferMask3D`	ChamferMask3D.`SVENSSON_3_4_5_7`	Use weights 3 for orthogonal neighbors, 4 for square-diagonal neighbors, 5 for cube-diagonals, and 7 for (2,1,1) shifts.

Methods in inra.ijpb.binary.distmap that return ChamferMask3D
Modifier and Type	Method	Description
`static ChamferMask3D`	ChamferMask3D.`fromWeights(float[] weights)`	Creates a new Chamfer mask from a list of weights.
`static ChamferMask3D`	ChamferMask3D.`fromWeights(int[] weights)`	Creates a new Chamfer mask from a list of weights.
`static ChamferMask3D`	ChamferMask3D.`fromWeights(short[] weights)`	Creates a new Chamfer mask from a list of weights.
`ChamferMask3D`	ChamferMasks3D.`getMask()`
`ChamferMask3D`	ChamferDistanceTransform3D.`mask()`
`ChamferMask3D`	ChamferDistanceTransform3DFloat.`mask()`
`ChamferMask3D`	ChamferDistanceTransform3DShort.`mask()`

Constructors in inra.ijpb.binary.distmap with parameters of type ChamferMask3D
Constructor	Description
`ChamferDistanceTransform3DFloat(ChamferMask3D mask)`	Creates a new algorithm for computing 3D distance maps on binary images based on a chamfer mask.
`ChamferDistanceTransform3DFloat(ChamferMask3D mask, boolean normalize)`	Creates a new algorithm for computing 3D distance maps on binary images based on a chamfer mask.
`ChamferDistanceTransform3DShort(ChamferMask3D mask)`	Creates a new algorithm for computing 3D distance maps based on a chamfer mask.
`ChamferDistanceTransform3DShort(ChamferMask3D mask, boolean normalize)`	Creates a new algorithm for computing 3D distance maps based on a chamfer mask.

Uses of ChamferMask3D in inra.ijpb.binary.geodesic

Constructors in inra.ijpb.binary.geodesic with parameters of type ChamferMask3D
Constructor	Description
`GeodesicDiameter3DFloat(ChamferMask3D chamferMask)`	Deprecated. Creates a new 3D geodesic diameter computation operator.
`GeodesicDistanceTransform3DFloat(ChamferMask3D mask, boolean normalizeMap)`	Creates a new algorithm for propagating geodesic distances.

Uses of ChamferMask3D in inra.ijpb.label

Methods in inra.ijpb.label with parameters of type ChamferMask3D
Modifier and Type	Method	Description
`static ij.ImageStack`	LabelImages.`distanceMap(ij.ImageStack image, ChamferMask3D mask, boolean floatingPoint, boolean normalize)`	Computes the 3D distance map from an image of labels, by specifying the chamfer mask and the normalization.

Uses of ChamferMask3D in inra.ijpb.label.distmap

Methods in inra.ijpb.label.distmap that return ChamferMask3D
Modifier and Type	Method	Description
`ChamferMask3D`	ChamferDistanceTransform3D.`mask()`

Constructors in inra.ijpb.label.distmap with parameters of type ChamferMask3D
Constructor	Description
`ChamferDistanceTransform3DFloat(ChamferMask3D mask)`	Creates a new algorithm for computing 3D distance maps on label images based on a chamfer mask.
`ChamferDistanceTransform3DFloat(ChamferMask3D mask, boolean normalize)`	Creates a new algorithm for computing 3D distance maps on label images based on a chamfer mask.
`ChamferDistanceTransform3DShort(ChamferMask3D mask)`	Creates a new algorithm for computing 3D distance maps on label images based on a chamfer mask.
`ChamferDistanceTransform3DShort(ChamferMask3D mask, boolean normalize)`	Creates a new algorithm for computing 3D distance maps on label images based on a chamfer mask.
`LabelDilation3DShort(ChamferMask3D mask)`	Deprecated. Creates a new 3D image for dilating labels using the specified chamfer mask, using 16-bits integer computation.

Uses of ChamferMask3D in inra.ijpb.label.filter

Constructors in inra.ijpb.label.filter with parameters of type ChamferMask3D
Constructor	Description
`ChamferLabelDilation3DShort(ChamferMask3D mask, double radius)`	Creates a new 3D image for dilating labels using the specified chamfer mask, using 16-bits integer computation.
`ChamferLabelErosion3DShort(ChamferMask3D mask, double radius)`	Creates a new operator for erosion of label images based on Chamfer masks.

Uses of ChamferMask3D in inra.ijpb.measure.region3d

Constructors in inra.ijpb.measure.region3d with parameters of type ChamferMask3D
Constructor	Description
`GeodesicDiameter3D(ChamferMask3D mask)`	Creates a new 3D geodesic diameter computation operator.

Uses of ChamferMask3D in inra.ijpb.morphology.strel

Constructors in inra.ijpb.morphology.strel with parameters of type ChamferMask3D
Constructor	Description
`ChamferStrel3D(ChamferMask3D chamferMask, double radius)`	Creates a new ChamferStrel3D from a chamfer mask (used for computing distances) and a radius (used to computing the extent of propagation).

Uses of ChamferMask3D in inra.ijpb.plugins

Methods in inra.ijpb.plugins with parameters of type ChamferMask3D
Modifier and Type	Method	Description
`ij.ImagePlus`	GeodesicDistanceMap3D.`process(ij.ImagePlus marker, ij.ImagePlus mask, java.lang.String newName, ChamferMask3D chamferMask, boolean normalize)`	Deprecated. Computes the distance propagated from the boundary of the white particles, within the black phase.
`ij.ImagePlus`	GeodesicDistanceMap3DPlugin.`process(ij.ImagePlus markerPlus, ij.ImagePlus maskPlus, java.lang.String newName, ChamferMask3D chamferMask, boolean normalize)`	Computes the distance propagated from the boundary of the white particles, within the white phase.
`ij.ImageStack`	GeodesicDistanceMap3DPlugin.`process(ij.ImageStack marker, ij.ImageStack mask, ChamferMask3D chamferMask, boolean normalize)`	Computes the distance within the mask, starting from the marker image.
`ij.ImageStack`	LabelMapMorphologicalFilteringPlugin.Operation.`process(ij.ImageStack image, ChamferMask3D mask, double radius)`	Applies the current operator to the input 3D image.