Uses of Interface
inra.ijpb.morphology.Strel3D

Packages that use Strel3D

Package	Description
inra.ijpb.morphology	Mathematical Morphology filters and reconstructions.
inra.ijpb.morphology.directional	Morphological directional filters.
inra.ijpb.morphology.filter	Morphological filtering operators implemented as classes.
inra.ijpb.morphology.strel	A collection of Structuring Element ("Strel") implementations for mathematical morphology.
inra.ijpb.plugins	Contains plugins, for integration with ImageJ GUI.

Uses of Strel3D in inra.ijpb.morphology

Subinterfaces of Strel3D in inra.ijpb.morphology

Modifier and Type	Interface	Description
interface	Strel	Interface for planar structuring elements.

Methods in inra.ijpb.morphology that return Strel3D

Modifier and Type	Method	Description
Strel3D	Strel3D.Shape.fromDiameter(int diam)	Creates a structuring element of the given type and with the specified diameter.
Strel3D	Strel3D.Shape.fromDiameterList(int diamX, int diamY, int diamZ)	Creates a structuring element of the given type and with the specified diameter.
Strel3D	Strel3D.Shape.fromRadius(int radius)	Creates a structuring element of the given type and with the specified radius.
Strel3D	Strel3D.Shape.fromRadiusList(int radiusX, int radiusY, int radiusZ)	Creates a structuring element of the given type and with the specified radius for each dimension.
Strel3D	Strel3D.reverse()	Returns a reversed (i.e. symmetric wrt the origin) version of this structuring element.

Methods in inra.ijpb.morphology with parameters of type Strel3D

Modifier and Type	Method	Description
ij.ImageStack	Morphology.Operation.apply(ij.ImageStack image, Strel3D strel)	Applies the current operator to the input 3D image.
static ij.ImagePlus	Morphology.blackTopHat(ij.ImagePlus imagePlus, Strel3D strel)	Computes black top hat (or "bottom hat") of the original image.
static ij.ImageStack	Morphology.blackTopHat(ij.ImageStack image, Strel3D strel)	Computes black top hat (or "bottom hat") of the original image.
static ij.ImagePlus	Morphology.closing(ij.ImagePlus imagePlus, Strel3D strel)	Performs morphological closing on the input image.
static ij.ImageStack	Morphology.closing(ij.ImageStack image, Strel3D strel)	Performs morphological closing on the input 3D image.
static ij.ImagePlus	Morphology.dilation(ij.ImagePlus imagePlus, Strel3D strel)	Performs morphological dilation on the input image.
static ij.ImageStack	Morphology.dilation(ij.ImageStack image, Strel3D strel)	Performs morphological dilation on the input 3D image.
static ij.ImagePlus	Morphology.erosion(ij.ImagePlus imagePlus, Strel3D strel)	Performs morphological erosion on the input image.
static ij.ImageStack	Morphology.erosion(ij.ImageStack image, Strel3D strel)	Performs morphological erosion on the input 3D image.
static ij.ImagePlus	Morphology.externalGradient(ij.ImagePlus imagePlus, Strel3D strel)	Computes the morphological external gradient of the input image.
static ij.ImageStack	Morphology.externalGradient(ij.ImageStack image, Strel3D strel)	Computes the morphological external gradient of the input 3D image.
static ij.ImagePlus	Morphology.gradient(ij.ImagePlus imagePlus, Strel3D strel)	Computes the morphological gradient of the input image.
static ij.ImageStack	Morphology.gradient(ij.ImageStack image, Strel3D strel)	Computes the morphological gradient of the input 3D image.
static ij.ImagePlus	Morphology.internalGradient(ij.ImagePlus imagePlus, Strel3D strel)	Computes the morphological internal gradient of the input image.
static ij.ImageStack	Morphology.internalGradient(ij.ImageStack image, Strel3D strel)	Computes the morphological internal gradient of the 3D input image.
static ij.ImagePlus	Morphology.laplacian(ij.ImagePlus imagePlus, Strel3D strel)	Computes the morphological Laplacian of the 3D input image.
static ij.ImageStack	Morphology.laplacian(ij.ImageStack image, Strel3D strel)	Computes the morphological Laplacian of the 3D input image.
static ij.ImagePlus	Morphology.opening(ij.ImagePlus imagePlus, Strel3D strel)	Performs morphological opening on the input image.
static ij.ImageStack	Morphology.opening(ij.ImageStack image, Strel3D strel)	Performs morphological opening on the input 3D image.
static ij.ImagePlus	Morphology.whiteTopHat(ij.ImagePlus imagePlus, Strel3D strel)	Computes white top hat of the original image.
static ij.ImageStack	Morphology.whiteTopHat(ij.ImageStack image, Strel3D strel)	Computes 3D white top hat of the original image.

Uses of Strel3D in inra.ijpb.morphology.directional

Classes in inra.ijpb.morphology.directional that implement Strel3D

Modifier and Type	Class	Description
class	OrientedLineStrel	A linear structuring element, defined by a length and an orientation.

Uses of Strel3D in inra.ijpb.morphology.filter

Methods in inra.ijpb.morphology.filter that return Strel3D

Modifier and Type	Method	Description
Strel3D	MorphologicalFilter.getStrel()

Constructors in inra.ijpb.morphology.filter with parameters of type Strel3D

Constructor	Description
BlackTopHat(Strel3D strel)	Creates a new Black Top-Hat operator with the specified structuring element.
Closing(Strel3D strel)	Creates a new Morphological Closing operator with the specified structuring element.
Dilation(Strel3D strel)	Creates a new Morphological Dilation operator with the specified structuring element.
Erosion(Strel3D strel)	Creates a new Morphological Erosion operator with the specified structuring element.
ExternalGradient(Strel3D strel)	Creates a new External Gradient operator with the specified structuring element.
Gradient(Strel3D strel)	Creates a new Morphological Gradient operator with the specified structuring element.
InternalGradient(Strel3D strel)	Creates a new Internal Gradient operator with the specified structuring element.
Laplacian(Strel3D strel)	Creates a new Morphological Laplacian operator with the specified structuring element.
Opening(Strel3D strel)	Creates a new Morphological Opening operator with the specified structuring element.
WhiteTopHat(Strel3D strel)	Creates a new White Top-Hat operator with the specified structuring element.

Uses of Strel3D in inra.ijpb.morphology.strel

Subinterfaces of Strel3D in inra.ijpb.morphology.strel

Modifier and Type	Interface	Description
interface	InPlaceStrel	A structuring element that can performs erosion or dilation directly in the original image buffer.
interface	InPlaceStrel3D	A structuring element that can performs erosion or dilation directly in the original image stack.
interface	SeparableStrel	Interface for structuring elements that can be decomposed into several "simpler" structuring elements.
interface	SeparableStrel3D	Interface for structuring elements that can be decomposed into several "simpler" structuring elements.

Classes in inra.ijpb.morphology.strel that implement Strel3D

Modifier and Type	Class	Description
class	AbstractInPlaceStrel	Implementation stub for in place Structuring elements.
class	AbstractInPlaceStrel3D	Implementation stub for in place 3D Structuring elements.
class	AbstractSeparableStrel	Implementation stub for separable Structuring elements.
class	AbstractSeparableStrel3D	Implementation stub for separable 3D Structuring elements.
class	AbstractStrel	Implementation basis for planar structuring elements.
class	AbstractStrel3D	Implementation basis for 3D structuring elements
class	BallStrel	A 3D structuring element with a ball shape, with same size in each direction.
class	ChamferStrel	Disk-shaped structuring element based on a chamfer mask and a radius.
class	ChamferStrel3D
class	Cross3DStrel	3D structuring element representing a 3x3x3 cross, that considers the center voxel together with the six orthogonal neighbors.
class	Cross3x3Strel	Structuring element representing a 3x3 cross, that considers the center pixels together with the four orthogonal neighbors.
class	CubeStrel	A cubic structuring element, obtained by decomposition into linear structuring elements with the same size along each dimension.
class	CuboidStrel	A cuboid structuring element, obtained by decomposition into linear structuring elements (that can have different sizes) along each dimension.
class	DiamondStrel	Structuring element representing a diamond of a given diameter.
class	DiskStrel	Disk structuring element.
class	EllipsoidStrel	A 3D structuring element with an ellipsoidal shape, oriented along the three main axes of the image.
class	ExtrudedStrel	Creates a 3D strel by replicating a 2D strel on a given number of slices.
class	LinearDepthStrel3D	An horizontal linear structuring element of a given length.
class	LinearDiagDownStrel	A diagonal linear structuring element of a given length, with direction vector (+1,+1) in image coordinate system.
class	LinearDiagUpStrel	A diagonal linear structuring element of a given length, with direction vector (+1,-1) in image coordinate system.
class	LinearHorizontalStrel	An horizontal linear structuring element of a given length.
class	LinearVerticalStrel	A vertical linear structuring element of a given length.
class	OctagonStrel	An Octagonal structuring element, obtained by decomposition into horizontal, vertical, and diagonal linear structuring elements.
class	SquareStrel	A square structuring element, obtained by decomposition into horizontal and vertical linear structuring elements with the same size.

Methods in inra.ijpb.morphology.strel that return Strel3D

Modifier and Type	Method	Description
Strel3D	BallStrel.reverse()
Strel3D	ChamferStrel3D.reverse()
Strel3D	Cross3DStrel.reverse()
Strel3D	EllipsoidStrel.reverse()	Returns this instance, as an ellipsoid is symmetric.
Strel3D	ExtrudedStrel.reverse()

Uses of Strel3D in inra.ijpb.plugins

Methods in inra.ijpb.plugins with parameters of type Strel3D

Modifier and Type	Method	Description
ij.ImagePlus	MorphologicalFilter3DPlugin.process(ij.ImagePlus image, Morphology.Operation op, Strel3D strel)	Applies the given operation to the given image.
ij.ImagePlus	MorphologicalFilterCross3DPlugin.process(ij.ImagePlus image, Morphology.Operation op, Strel3D strel)	Applies the given operation to the given image.