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O
- OCTAGON - inra.ijpb.morphology.Strel.Shape
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Octagon of a given diameter
- OCTAGON - inra.ijpb.morphology.Strel3D.Shape
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Octagon of a given diameter
- OctagonStrel - Class in inra.ijpb.morphology.strel
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An Octagonal structuring element, obtained by decomposition into horizontal, vertical, and diagonal linear structuring elements.
- OctagonStrel(int) - Constructor for class inra.ijpb.morphology.strel.OctagonStrel
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Creates a new octagonal structuring element of a given orthogonal diameter.
- OctagonStrel(int, int) - Constructor for class inra.ijpb.morphology.strel.OctagonStrel
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Creates a new octagonal structuring element of a given orthogonal diameter and with a given offset.
- opening(ImagePlus, Strel3D) - Static method in class inra.ijpb.morphology.Morphology
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Performs morphological opening on the input image.
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel3D
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractSeparableStrel3D
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractStrel
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractStrel3D
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Performs a morphological opening on the input stack, by applying first an erosion, then a dilation with the reversed structuring element.
- opening(ImageStack) - Method in class inra.ijpb.morphology.strel.Cross3DStrel
- opening(ImageStack) - Method in interface inra.ijpb.morphology.Strel3D
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Performs a morphological opening of the input image with this structuring element, and returns the result in a new ImageStack.
- opening(ImageStack, Strel3D) - Static method in class inra.ijpb.morphology.Morphology
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Performs morphological opening on the input 3D image.
- opening(ImageProcessor) - Method in class inra.ijpb.morphology.directional.OrientedLineStrel
- opening(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel
- opening(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractSeparableStrel
- opening(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractStrel
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Performs a morphological opening on the input image, by applying first an erosion, then a dilation with the reversed structuring element.
- opening(ImageProcessor) - Method in interface inra.ijpb.morphology.Strel
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Performs a morphological opening of the input image with this structuring element, and returns the result in a new ImageProcessor.
- opening(ImageProcessor, Strel) - Static method in class inra.ijpb.morphology.Morphology
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Performs morphological opening on the input image.
- Opening - Class in inra.ijpb.morphology.filter
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Performs morphological opening on 2D/3D images.
- Opening(Strel3D) - Constructor for class inra.ijpb.morphology.filter.Opening
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Creates a new Morphological Opening operator with the specified structuring element.
- OPENING - inra.ijpb.morphology.directional.DirectionalFilter.Operation
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The morphological opening operation
- OPENING - inra.ijpb.morphology.Morphology.Operation
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Morphological opening (erosion followed by dilation)
- OPENING - inra.ijpb.plugins.LabelMapMorphologicalFilteringPlugin.Operation
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Morphological opening (erosion followed by dilation)
- optimizeDisplayRange(ImagePlus) - Static method in class inra.ijpb.data.image.Images3D
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Optimize display range of 2d/3d image based on its minimum and maximum values
- OR - Static variable in interface inra.ijpb.math.ImageCalculator.Operation
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Or operator.
- orientation() - Method in class inra.ijpb.geometry.Ellipse
- orientation() - Method in class inra.ijpb.geometry.OrientedBox2D
- orientedBoundingBox(ArrayList<? extends Point2D>) - Static method in class inra.ijpb.measure.region2d.OrientedBoundingBox2D
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Computes the object-oriented bounding box of a set of points.
- orientedBoundingBox(ArrayList<? extends Point2D>, Calibration) - Static method in class inra.ijpb.measure.region2d.OrientedBoundingBox2D
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Computes the object-oriented bounding box of a set of points, computing convex hull in pixel coordinates.
- OrientedBoundingBox2D - Class in inra.ijpb.measure.region2d
- OrientedBoundingBox2D() - Constructor for class inra.ijpb.measure.region2d.OrientedBoundingBox2D
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Default constructor.
- OrientedBoundingBoxPlugin - Class in inra.ijpb.plugins
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Plugin for computing oriented bounding box.
- OrientedBoundingBoxPlugin() - Constructor for class inra.ijpb.plugins.OrientedBoundingBoxPlugin
- orientedBox - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features
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The boolean flag for computing oriented box.
- OrientedBox2D - Class in inra.ijpb.geometry
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An oriented Box in 2 dimensions, used to store results of oriented bounding box.
- OrientedBox2D(double, double, double, double, double) - Constructor for class inra.ijpb.geometry.OrientedBox2D
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Default constructor for OrientedBox2D, that specifies center as two coordinates.
- OrientedBox2D(Point2D, double, double, double) - Constructor for class inra.ijpb.geometry.OrientedBox2D
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Default constructor for OrientedBox2D.
- orientedBoxElongation - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features
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The boolean flag for computing elongation of oriented box.
- OrientedLineStrel - Class in inra.ijpb.morphology.directional
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A linear structuring element, defined by a length and an orientation.
- OrientedLineStrel(double, double) - Constructor for class inra.ijpb.morphology.directional.OrientedLineStrel
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Creates an new instance of linear structuring element.
- OrientedLineStrelFactory - Class in inra.ijpb.morphology.directional
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Factory for oriented linear structuring elements.
- OrientedLineStrelFactory(double) - Constructor for class inra.ijpb.morphology.directional.OrientedLineStrelFactory
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Constructs a new oriented line factory, that will generate lines with approximately the given length.
- OrientedStrelFactory - Interface in inra.ijpb.morphology.directional
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Factory for generating oriented structuring elements.
- OVERLAID_BASINS - inra.ijpb.plugins.InteractiveMarkerControlledWatershed.ResultMode
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Display colored basins overlaid over original image.
- OVERLAID_BASINS - inra.ijpb.plugins.MorphologicalSegmentation.ResultMode
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display mode with transparent color basins on top of original image
- OVERLAID_DAMS - inra.ijpb.plugins.InteractiveMarkerControlledWatershed.ResultMode
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Display colored dams overlaid over original image.
- OVERLAID_DAMS - inra.ijpb.plugins.MorphologicalSegmentation.ResultMode
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display mode with watershed dams in red on top of original image
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