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B

BACKGROUND - Static variable in class inra.ijpb.binary.geodesic.GeodesicDistanceTransformFloat
The value associated to the background in the result image.
BACKGROUND - Static variable in class inra.ijpb.binary.geodesic.GeodesicDistanceTransformFloatHybrid
The value associated to the background in the result image.
BACKGROUND - Static variable in class inra.ijpb.binary.geodesic.GeodesicDistanceTransformShort
The value associated to the background in the result image.
BACKGROUND - Static variable in class inra.ijpb.binary.geodesic.GeodesicDistanceTransformShortHybrid
The value associated to the background in the result image.
BACKGROUND - Static variable in interface inra.ijpb.morphology.Strel
Default value for background pixels.
BACKGROUND - Static variable in interface inra.ijpb.morphology.Strel3D
Default value for background pixels.
BALL - inra.ijpb.morphology.Strel3D.Shape
Ball of a given radius
BallStrel - Class in inra.ijpb.morphology.strel
A 3D structuring element with a ball shape, with same size in each direction.
BASINS - inra.ijpb.plugins.InteractiveMarkerControlledWatershed.ResultMode
Display only colored basins.
BASINS - inra.ijpb.plugins.MorphologicalSegmentation.ResultMode
display mode showing only color basins
binarize(ImagePlus) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 2D or 3D image into a binary image by setting non-zero elements to 255.
binarize(ImageStack) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 3D image into a binary 3D image by setting non-zero voxels to 255.
binarize(ImageProcessor) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 2D image into a binary 2D image by setting non-zero pixels to 255.
binarize(ImageProcessor, int) - Static method in class inra.ijpb.label.LabelImages
Returns the binary image with value equals to true only when the corresponding value in the input image equals label.
binarizeBackground(ImagePlus) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 2D or 3D image into a binary image by setting zero elements to 255, and non zero ones to 0.
binarizeBackground(ImageStack) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 3D image into a binary 3D image by setting zero elements to 255, and non zero ones to 0.
binarizeBackground(ImageProcessor) - Static method in class inra.ijpb.binary.BinaryImages
Converts a grayscale 2D image into a binary 2D image by setting zero elements to 255, and non zero ones to 0.
BinaryConfigurationsHistogram2D - Class in inra.ijpb.measure.region2d
Computes histogram of binary configurations composed of 2-by-2 pixels (planar images).
BinaryConfigurationsHistogram2D() - Constructor for class inra.ijpb.measure.region2d.BinaryConfigurationsHistogram2D
Default empty constructor.
BinaryConfigurationsHistogram3D - Class in inra.ijpb.measure.region3d
Computes histogram of binary 2-by-2-by-2 configurations within a 3D image.
BinaryConfigurationsHistogram3D() - Constructor for class inra.ijpb.measure.region3d.BinaryConfigurationsHistogram3D
Empty constructor.
BinaryImages - Class in inra.ijpb.binary
A collection of static methods for operating on binary images (2D/3D).
binaryMarkers - Static variable in class inra.ijpb.plugins.MarkerControlledWatershed3DPlugin
flag set to TRUE if markers are binary, to FALSE if markers are labels
BinaryOrLabelOverlayPlugin - Class in inra.ijpb.plugins
Display a label map or a binary image as overlay onto a grayscale image.
BinaryOrLabelOverlayPlugin() - Constructor for class inra.ijpb.plugins.BinaryOrLabelOverlayPlugin
 
binaryOverlay(ImagePlus, ImagePlus, Color) - Static method in class inra.ijpb.data.image.ColorImages
Applies an overlay of a binary image mask onto a grayscale or color image, using the specified color.
binaryOverlay(ImagePlus, ImagePlus, Color, double) - Static method in class inra.ijpb.data.image.ColorImages
Applies an overlay of a binary image mask onto a 2D or 3D grayscale image, using the specified color and opacity.
binaryOverlay(ImageStack, ImageStack, Color) - Static method in class inra.ijpb.data.image.ColorImages
Applies an overlay of a binary image mask onto a grayscale or color image, using the specified color.
binaryOverlay(ImageStack, ImageStack, Color, double) - Static method in class inra.ijpb.data.image.ColorImages
Computes the overlay of a binary image over a grayscale image, using an opacity for the binary layer.
binaryOverlay(ByteProcessor, ImageProcessor, Color, double) - Static method in class inra.ijpb.data.image.ColorImages
Applies an overlay of a binary image mask onto a grayscale image, using the specified color and opacity.
binaryOverlay(ImageProcessor, ImageProcessor, Color) - Static method in class inra.ijpb.data.image.ColorImages
Applies an overlay of a binary image mask onto a grayscale or color image, using the specified color.
BinaryOverlay - Class in inra.ijpb.color
Computes overlay of a binary image mask onto a grayscale or color image, using the specified color.
BinaryOverlay() - Constructor for class inra.ijpb.color.BinaryOverlay
Empty constructor.
BinaryOverlayPlugin - Class in inra.ijpb.plugins
 
BinaryOverlayPlugin() - Constructor for class inra.ijpb.plugins.BinaryOverlayPlugin
 
BLACK - inra.ijpb.color.CommonColors
The black color (0,0,0).
BLACK - inra.ijpb.data.border.BorderManager.Type
uses black value (0) to fill border
BLACK - inra.ijpb.data.border.BorderManager3D.Type
uses black value (0) to fill border
BLACK - inra.ijpb.util.CommonColors
Deprecated.
The black color (0,0,0).
blackTopHat(ImagePlus, Strel3D) - Static method in class inra.ijpb.morphology.Morphology
Computes black top hat (or "bottom hat") of the original image.
blackTopHat(ImageStack, Strel3D) - Static method in class inra.ijpb.morphology.Morphology
Computes black top hat (or "bottom hat") of the original image.
blackTopHat(ImageProcessor, Strel) - Static method in class inra.ijpb.morphology.Morphology
Computes black top hat (or "bottom hat") of the original image.
BlackTopHat - Class in inra.ijpb.morphology.filter
Performs morphological black top-hat on 2D/3D images.
BlackTopHat(Strel3D) - Constructor for class inra.ijpb.morphology.filter.BlackTopHat
Creates a new Black Top-Hat operator with the specified structuring element.
BLUE - inra.ijpb.color.CommonColors
The blue color
BLUE - inra.ijpb.util.CommonColors
Deprecated.
The blue color
BorderManager - Interface in inra.ijpb.data.border
Manages borders of an image, by providing methods for accessing values also for position out of image bounds.
BorderManager.Type - Enum in inra.ijpb.data.border
A set of pre-defined border managers stored in an enumeration.
BorderManager3D - Interface in inra.ijpb.data.border
Manages borders of an image, by providing methods for accessing values also for position out of image bounds.
BorderManager3D.Type - Enum in inra.ijpb.data.border
A set of pre-defined border managers stored in an enumeration.
BORGEFORS - inra.ijpb.binary.ChamferWeights
Deprecated.
Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors (best approximation of Euclidean distance for 3-by-3 masks)
BORGEFORS - inra.ijpb.binary.ChamferWeights3D
Deprecated.
Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors, and 5 for cube-diagonals (best approximation for 3-by-3-by-3 masks).
BORGEFORS - inra.ijpb.binary.distmap.ChamferMasks2D
Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors, and 5 for cube-diagonals (best approximation for 3-by-3-by-3 masks).
BORGEFORS - inra.ijpb.binary.distmap.ChamferMasks3D
Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors, and 5 for cube-diagonals (best approximation for 3-by-3-by-3 masks).
BORGEFORS - Static variable in class inra.ijpb.binary.distmap.ChamferMask2D
Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors (best approximation for 3-by-3 masks).
BORGEFORS - Static variable in class inra.ijpb.binary.distmap.ChamferMask3D
Use weights 3 for orthogonal neighbors, 4 for square-diagonal neighbors, and 5 for cube-diagonals (best approximation for 3-by-3-by-3 masks).
BOTTOMHAT - inra.ijpb.morphology.Morphology.Operation
Black Top-Hat
boundaries - Variable in class inra.ijpb.label.conncomp.LabelBoundariesLabeling2D.Result
The map between the label of a boundary and the Boundary instances that store indices of adjacent regions.
boundaries - Variable in class inra.ijpb.label.conncomp.LabelBoundariesLabeling3D.Result
The map between the label of a boundary and the Boundary instances that store indices of adjacent regions.
Boundary - Class in inra.ijpb.label.conncomp
A boundary between several regions.
boundaryLabelMap - Variable in class inra.ijpb.label.conncomp.LabelBoundariesLabeling2D.Result
The label map containing boundary labels or zero for non-label pixels.
boundaryLabelMap - Variable in class inra.ijpb.label.conncomp.LabelBoundariesLabeling3D.Result
The label map containing boundary labels or zero for non-label pixels.
boundaryPixelsMiddleEdges(ImageProcessor) - Static method in class inra.ijpb.measure.region2d.RegionBoundaries
Extracts boundary points from a binary region, keeping middle points of pixel edges.
boundaryPixelsMiddleEdges(ImageProcessor, int[]) - Static method in class inra.ijpb.measure.region2d.RegionBoundaries
Extracts boundary points from the different regions.
BoundarySet - Class in inra.ijpb.label.conncomp
A list of boundaries, indexed by an integer label.
BoundarySet() - Constructor for class inra.ijpb.label.conncomp.BoundarySet
Creates a new (empty) BoundarySet.
boundingBox - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features
The boolean flag for computing bounding box.
boundingBox() - Method in class inra.ijpb.geometry.Polygon2D
Returns the bounding box of this polygon.
boundingBox(ImageStack) - Static method in class inra.ijpb.measure.GeometricMeasures3D
Deprecated.
use BoundingBox3D instead
boundingBox(ImageStack, int[]) - Static method in class inra.ijpb.measure.GeometricMeasures3D
Deprecated.
Computes bounding box of each label in input stack and returns the result as an array of double for each label.
boundingBox(ImageProcessor) - Static method in class inra.ijpb.measure.GeometricMeasures2D
Deprecated.
use BoundingBox class instead
boundingBox(ImageProcessor, int[]) - Static method in class inra.ijpb.measure.GeometricMeasures2D
Deprecated.
use BoundingBox class instead
BoundingBox - Class in inra.ijpb.measure.region2d
Compute bounding box of each region within a label or binary image.
BoundingBox() - Constructor for class inra.ijpb.measure.region2d.BoundingBox
Default constructor
BoundingBox3D - Class in inra.ijpb.measure.region3d
Compute bounding box of each region within a label or binary image.
BoundingBox3D() - Constructor for class inra.ijpb.measure.region3d.BoundingBox3D
Default constructor
BoundingBox3DPlugin - Class in inra.ijpb.plugins
Plugin for measuring extend of 3D bounding box from label images.
BoundingBox3DPlugin() - Constructor for class inra.ijpb.plugins.BoundingBox3DPlugin
 
boundingBoxes(ImageStack, int[], Calibration) - Static method in class inra.ijpb.measure.region3d.BoundingBox3D
Compute bounding box of each region in input 3D label image and returns the result as an array of Box3D for each region.
boundingBoxes(ImageProcessor, int[], Calibration) - Static method in class inra.ijpb.measure.region2d.BoundingBox
Compute bounding box of each region in input image and returns the result as an array of Box2D for each label.
BoundingBoxPlugin - Class in inra.ijpb.plugins
Plugin for computing (2D) bounding box of regions from label images.
BoundingBoxPlugin() - Constructor for class inra.ijpb.plugins.BoundingBoxPlugin
 
Box2D - Class in inra.ijpb.geometry
A bounding Box in 2 dimensions.
Box2D(double, double, double, double) - Constructor for class inra.ijpb.geometry.Box2D
Default constructor of the bounding box, that specifies the bounds along each dimension.
Box3D - Class in inra.ijpb.geometry
A bounding Box in 3 dimensions.
Box3D(double, double, double, double, double, double) - Constructor for class inra.ijpb.geometry.Box3D
Default constructor, that specifies the bounds along each dimension.
BoxDiagonalOpeningQueue - Class in inra.ijpb.morphology.attrfilt
Area opening using priority queue for updating each regional maxima.
BoxDiagonalOpeningQueue() - Constructor for class inra.ijpb.morphology.attrfilt.BoxDiagonalOpeningQueue
 
BY_DILATION - inra.ijpb.morphology.geodrec.GeodesicReconstructionType
morphological reconstruction by dilation
BY_DILATION - inra.ijpb.plugins.MorphologicalReconstruction3DPlugin.Operation
reconstruction by dilation
BY_DILATION - inra.ijpb.plugins.MorphologicalReconstructionPlugin.Operation
reconstruction by dilation
BY_EROSION - inra.ijpb.morphology.geodrec.GeodesicReconstructionType
morphological reconstruction by erosion
BY_EROSION - inra.ijpb.plugins.MorphologicalReconstruction3DPlugin.Operation
reconstruction by erosion
BY_EROSION - inra.ijpb.plugins.MorphologicalReconstructionPlugin.Operation
reconstruction by erosion
ByteStackWrapper - Class in inra.ijpb.data.image
Access the data of a 3D image containing gray8 values stored as bytes.
ByteStackWrapper(ImageStack) - Constructor for class inra.ijpb.data.image.ByteStackWrapper
Creates a new wrapper to the ImageStack.
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