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samplingVolume(ImageStack, Calibration) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Returns the "inner volume" of the 3D image, i.e. the calibrated volume of the image without taking into account the voxels at the border of the image.
samplingVolume(ImageStack, Calibration) - Static method in class inra.ijpb.measure.region3d.IntrinsicVolumes3DUtils: Returns the "inner volume" of the 3D image, i.e. the calibrated volume of the image without taking into account the voxels at the border of the image.
secondExtremity - Variable in class inra.ijpb.measure.region2d.GeodesicDiameter.Result: The second geodesic extremity found by the algorithm.
secondExtremity - Variable in class inra.ijpb.measure.region3d.GeodesicDiameter3D.Result: The second geodesic extremity found by the algorithm.
segment(String, String, String) - Static method in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: Segment current image (GUI needs to be running)
segment(String, String, String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Segment current image (GUI needs to be running)
segment(String, String, String, String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Deprecated.
the priority queue method is now the only one
selectedLabelsToMask(ImagePlus, int[]) - Static method in class inra.ijpb.plugins.NeighborLabelsPlugin: Creates a new image containing only the specified labels.
SelectLabelsPlugin - Class in inra.ijpb.plugins: Creates a new binary image containing only the selected label(s).
SelectLabelsPlugin() - Constructor for class inra.ijpb.plugins.SelectLabelsPlugin
SeparableStrel - Interface in inra.ijpb.morphology.strel: Interface for structuring elements that can be decomposed into several "simpler" structuring elements.
SeparableStrel3D - Interface in inra.ijpb.morphology.strel: Interface for structuring elements that can be decomposed into several "simpler" structuring elements.
set(int, int) - Method in class inra.ijpb.data.Cursor2D: Sets the position of this cursor.
set(int, int, int) - Method in class inra.ijpb.data.Cursor3D: Sets the position of this cursor.
set(int, int, int, int) - Method in class inra.ijpb.data.image.ByteStackWrapper
set(int, int, int, int) - Method in class inra.ijpb.data.image.FloatStackWrapper
set(int, int, int, int) - Method in interface inra.ijpb.data.image.Image3D: Changes the value at the specified coordinates, using an integer to specify the new value.
set(int, int, int, int) - Method in class inra.ijpb.data.image.ShortStackWrapper
SET_DISPLAY - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to set the output display format
SET_DISPLAY - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to set the output display format
SET_GRADIENT_TYPE - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to set the gradient method
SET_INPUT_TYPE - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to set the input image type
SET_INPUT_TYPE - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to set the input image type
SET_RADIUS - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to set the gradient radius
SET_RADIUS - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to set the gradient radius
setAll(boolean) - Method in class inra.ijpb.plugins.AnalyzeRegions.Features: Set the state of all features.
setChamferWeights(float[]) - Method in class inra.ijpb.measure.region2d.GeodesicDiameter: Deprecated.
setChannelName(String) - Method in class inra.ijpb.morphology.strel.AbstractStrel: Sets the name of the currently processed channel.
setChannelName(String) - Method in interface inra.ijpb.morphology.Strel: Sets the name of the currently processed channel, for process monitoring.
setComputePaths(boolean) - Method in class inra.ijpb.measure.region2d.GeodesicDiameter: Updates the value of the computePahs option.
setConnectivity(int) - Method in class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D
setConnectivity(int) - Method in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D
setConnectivity(int) - Method in class inra.ijpb.morphology.attrfilt.AreaOpeningQueue: Changes the connectivity of this algorithm.
setConnectivity(int) - Method in class inra.ijpb.morphology.attrfilt.BoxDiagonalOpeningQueue: Changes the connectivity of this algorithm.
setConnectivity(int) - Method in class inra.ijpb.morphology.attrfilt.SizeOpening3DQueue: Changes the connectivity used by this algorithm.
setConnectivity(int) - Method in class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo: Sets the connectivity value.
setConnectivity(int) - Method in class inra.ijpb.morphology.extrema.RegionalExtremaAlgo: Sets the connectivity value.
setConnectivity(int) - Method in interface inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgo: Changes the connectivity of the algorithm to either 6 or 26.
setConnectivity(int) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub
setConnectivity(int) - Method in interface inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgo: Changes the connectivity of the algorithm to either 4 or 8.
setConnectivity(int) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgoStub
setConnectivity(int) - Method in class inra.ijpb.watershed.WatershedTransform2D: Set the pixel connectivity (4 or 8)
setConnectivity(int) - Method in class inra.ijpb.watershed.WatershedTransform3D: Set the voxel connectivity (6 or 26)
setCursor(Cursor2D) - Method in class inra.ijpb.data.Neighborhood2D: Sets the position of the Neighborhood2D.
setCursor(Cursor3D) - Method in class inra.ijpb.data.Neighborhood3D: Sets the position of the Neighborhood3D.
setDirectionNumber(int) - Method in class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D
setDirectionNumber(int) - Method in class inra.ijpb.measure.region3d.InterfaceSurfaceArea: Specifies the number of directions to use.
setDirectionNumber(int) - Method in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D
setDisplayFormat(String) - Static method in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: Set the display format in the GUI
setDisplayFormat(String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Set the display format in the GUI
setExtremaType(ExtremaType) - Method in class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo: Sets the type of extrema.
setExtremaType(ExtremaType) - Method in class inra.ijpb.morphology.extrema.RegionalExtremaAlgo: Sets the type of extrema.
setGradientRadius(String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Set the gradient radius
setGradientType(String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Set the gradient method to use
setInputImageType(String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Set input image type
SetLabelMapPlugin - Class in inra.ijpb.plugins: Changes the current LUT such that each label is associated to a different color, and specifies color of background.
SetLabelMapPlugin() - Constructor for class inra.ijpb.plugins.SetLabelMapPlugin
setMinMaxSign(int) - Method in class inra.ijpb.morphology.strel.LocalExtremumBufferDouble: Changes the sign used for distinguishing minimum and maximum.
setMinMaxSign(int) - Method in class inra.ijpb.morphology.strel.LocalExtremumBufferGray8: Changes the sign used for distinguishing minimum and maximum.
setNPasses(int) - Method in class inra.ijpb.plugins.AreaOpeningPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.ChamferDistanceMapPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.DirectionalFilteringPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.DistanceTransformWatershed
setNPasses(int) - Method in class inra.ijpb.plugins.ExtendedMinAndMaxPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.GrayscaleAreaOpeningPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.GrayscaleAttributeFilteringPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.GrayscaleBoxDiameterOpeningPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.InteractiveGeodesicDistanceMap
setNPasses(int) - Method in class inra.ijpb.plugins.InteractiveMorphologicalReconstruction
setNPasses(int) - Method in class inra.ijpb.plugins.MorphologicalFilterPlugin
setNPasses(int) - Method in class inra.ijpb.plugins.RegionalMinAndMaxPlugin
setProgressVisible(boolean) - Method in class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo: Sets the value of progress visibility option.
setProgressVisible(boolean) - Method in class inra.ijpb.morphology.extrema.RegionalExtremaAlgo: Sets the value of progress visibility option.
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Float
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Gray16
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Gray8
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid1Image3D
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstructionHybrid
setReconstructionType(GeodesicReconstructionType) - Method in class inra.ijpb.morphology.geodrec.GeodesicReconstructionScanning
setShowGradient(String) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Set GUI to show gradient image in the main canvas
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.AnalyzeRegions
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.AreaOpeningPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.ChamferDistanceMapPlugin: Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.DirectionalFilteringPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.DistanceTransformWatershed: Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.ExtendedMinAndMaxPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.GrayscaleAreaOpeningPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.GrayscaleAttributeFilteringPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.GrayscaleBoxDiameterOpeningPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.InteractiveGeodesicDistanceMap: Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.InteractiveMorphologicalReconstruction: Called at the beginning of the process to know if the plugin can be run with current image, and at the end to finalize.
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.MicrostructureAnalysisPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.MorphologicalFilterPlugin: Setup function is called in the beginning of the process, but also at the end.
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.RegionalMinAndMaxPlugin
setup(String, ImagePlus) - Method in class inra.ijpb.plugins.RegionMorphometryPlugin: Deprecated.
setValue(int, int, int, double) - Method in class inra.ijpb.data.image.ByteStackWrapper
setValue(int, int, int, double) - Method in class inra.ijpb.data.image.FloatStackWrapper
setValue(int, int, int, double) - Method in interface inra.ijpb.data.image.Image3D: Changes the value at the specified coordinates, using a double to specify the new value.
setValue(int, int, int, double) - Method in class inra.ijpb.data.image.ShortStackWrapper
setValue(Cursor3D, double) - Method in class inra.ijpb.data.image.ByteStackWrapper
setValue(Cursor3D, double) - Method in class inra.ijpb.data.image.FloatStackWrapper
setValue(Cursor3D, double) - Method in interface inra.ijpb.data.image.Image3D: Changes the value at the specified coordinates, using a double to specify the new value.
setValue(Cursor3D, double) - Method in class inra.ijpb.data.image.ShortStackWrapper
setVerbose(boolean) - Method in class inra.ijpb.watershed.WatershedTransform2D: Set verbose flag
setVerbose(boolean) - Method in class inra.ijpb.watershed.WatershedTransform3D: Set verbose flag
setVertex(int, Point2D) - Method in class inra.ijpb.geometry.Polygon2D: Changes vertex coordinate at the specified index
ShiftedCross3x3Strel - Class in inra.ijpb.morphology.strel: Structuring element representing a 3x3 cross, that considers the reference pixel together with four neighbors located either on the left or on the right of the reference pixel.
ShortOffset(int, int, int, short) - Constructor for class inra.ijpb.binary.ChamferWeights3D.ShortOffset: Deprecated.

Creates a new offset for integer computations.
ShortOffset(int, int, int, short) - Constructor for class inra.ijpb.binary.distmap.ChamferMask3D.ShortOffset: Creates a new Offset using a 16-bits integer weight.
ShortOffset(int, int, short) - Constructor for class inra.ijpb.binary.distmap.ChamferMask2D.ShortOffset: Creates a new Offset using a 16-bits integer weight.
ShortStackWrapper - Class in inra.ijpb.data.image: Access the data of a 3D image containing gray16 values stored as short.
ShortStackWrapper(ImageStack) - Constructor for class inra.ijpb.data.image.ShortStackWrapper: Creates a new wrapper to the ImageStack.
SHOW_GRADIENT - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to set the flag to show the gradient image
SHOW_GRADIENT - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to set the flag to show the gradient image
SHOW_RESULT_OVERLAY - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to toggle the current overlay
SHOW_RESULT_OVERLAY - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to toggle the current overlay
showDialog() - Method in class inra.ijpb.plugins.SetLabelMapPlugin: Displays the dialog.
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.AreaOpeningPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.ChamferDistanceMapPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.DirectionalFilteringPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.DistanceTransformWatershed
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.ExtendedMinAndMaxPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.GrayscaleAreaOpeningPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.GrayscaleAttributeFilteringPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.GrayscaleBoxDiameterOpeningPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.InteractiveGeodesicDistanceMap
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.InteractiveMorphologicalReconstruction
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.MorphologicalFilterPlugin
showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class inra.ijpb.plugins.RegionalMinAndMaxPlugin
showElapsedTime(String, double, ImagePlus) - Static method in class inra.ijpb.util.IJUtils: Display elapsed time, converted into seconds, and computes number of processed elements per second.
showProgress - Variable in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub: Boolean flag for the display of algorithm progress in ImageJ status bar
showProgress - Variable in class inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgoStub: Boolean flag for the display of algorithm progress in ImageJ status bar
showProgress() - Method in class inra.ijpb.morphology.strel.AbstractStrel3D
showProgress() - Method in interface inra.ijpb.morphology.Strel3D: Returns a boolean flag indicating whether or not this structuring element should display its progress or not
showProgress(boolean) - Method in class inra.ijpb.morphology.strel.AbstractStrel3D
showProgress(boolean) - Method in interface inra.ijpb.morphology.Strel3D: Specifies if this structuring element should display its progress.
showStatus - Variable in class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub: Boolean flag for the display of algorithm state in ImageJ status bar
showStatus - Variable in class inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgoStub: Boolean flag for the display of algorithm state in ImageJ status bar
SHUFFLE_COLORS - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: name of the macro method to shuffle color labels
SHUFFLE_COLORS - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation: name of the macro method to shuffle color labels
shuffleColors() - Static method in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed: Shuffle LUT of current display image.
shuffleColors() - Static method in class inra.ijpb.plugins.MorphologicalSegmentation: Shuffle LUT of current display image.
shuffleLut(byte[][]) - Static method in class inra.ijpb.color.ColorMaps: Creates a new LUT by applying a random permutation to the colors within the original LUT.
shuffleLut(byte[][], long) - Static method in class inra.ijpb.color.ColorMaps: Shuffles the LUT, using the specified seed for initializing the random generator.
signedArea() - Method in class inra.ijpb.geometry.Polygon2D: Computes the signed area of this polygon
size() - Method in class inra.ijpb.label.conncomp.BoundarySet
sizeOpening(ImagePlus, int) - Static method in class inra.ijpb.binary.BinaryImages: Applies size opening on a binary 2D or 3D image.
sizeOpening(ImagePlus, int) - Static method in class inra.ijpb.label.LabelImages: Applies size opening on a label image: creates a new label image that contains only particles with at least the specified number of pixels or voxels.
sizeOpening(ImagePlus, int) - Static method in class inra.ijpb.morphology.AttributeFiltering: Applies grayscale size opening on input image, by retaining only the connected components that contain at least the specified number of elements (pixels or voxels).
SizeOpening3D - Interface in inra.ijpb.morphology.attrfilt: Size opening for 3D gray level images.
SizeOpening3DQueue - Class in inra.ijpb.morphology.attrfilt: Volume opening on 3D grayscale image using priority queue for updating each 3D regional maxima.
SizeOpening3DQueue() - Constructor for class inra.ijpb.morphology.attrfilt.SizeOpening3DQueue
SizeOpeningPlugin - Class in inra.ijpb.plugins: Select binary particles in a 2D or 3D image based on number of pixels.
SizeOpeningPlugin() - Constructor for class inra.ijpb.plugins.SizeOpeningPlugin
skeleton(ImageProcessor) - Static method in class inra.ijpb.binary.BinaryImages: Computes the skeleton of a binary image, and returns another binary image.
SPECTRUM - inra.ijpb.color.ColorMaps.CommonLabelMaps: Colormap containing a whole range of colors
Sphere - Class in inra.ijpb.geometry: Contains data for representing sphere in the 3D space.
Sphere(Point3D, double) - Constructor for class inra.ijpb.geometry.Sphere: Creates a new sphere from a center and a radius.
sphericalAngle(Vector3D, Vector3D, Vector3D) - Static method in class inra.ijpb.measure.region3d.GeometryUtils: Computes the spherical angle of three points on the unit sphere, based on the vectors.
sphericalVoronoiDomainArea(Vector3D, Vector3D[]) - Static method in class inra.ijpb.measure.region3d.GeometryUtils: Computes area of a spherical Voronoi domain, based on a germ and several neighbors.
sphericity(double[], double[]) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Helper function that computes the sphericity index of 3D particles, based on the value of volume and surface area.
sphericity(double, double) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Helper function that computes the sphericity index of 3D particles, based on the value of volume and surface area.
splitChannels(ImageStack) - Static method in class inra.ijpb.data.image.ColorImages: Splits the channels of the color image into three new instances of ByteProcessor.
splitChannels(ImageProcessor) - Static method in class inra.ijpb.data.image.ColorImages: Splits the channels of the color image into three new instances of ByteProcessor.
SQUARE - inra.ijpb.morphology.Strel.Shape: Square of a given side
SQUARE - inra.ijpb.morphology.Strel3D.Shape: Square of a given side
SquareStrel - Class in inra.ijpb.morphology.strel: A square structuring element, obtained by decomposition into horizontal and vertical linear structuring elements with the same size.
SquareStrel(int) - Constructor for class inra.ijpb.morphology.strel.SquareStrel: Creates a new square structuring element of a given size.
SquareStrel(int, int) - Constructor for class inra.ijpb.morphology.strel.SquareStrel: Creates a new square structuring element of a given size and with a given offset.
StraightLine2D - Class in inra.ijpb.geometry: A straight line in the plane.
StraightLine2D(Point2D, Vector2D) - Constructor for class inra.ijpb.geometry.StraightLine2D: Creates a new straight line from an origin and a direction vector.
StraightLine2D(Point2D, Point2D) - Constructor for class inra.ijpb.geometry.StraightLine2D: Creates a new straight line from two points belonging to the line
Strel - Interface in inra.ijpb.morphology: Interface for planar structuring elements.
Strel.Shape - Enum in inra.ijpb.morphology: An enumeration of the different possible structuring element shapes.
Strel3D - Interface in inra.ijpb.morphology: Structuring element that process 3D stack.
Strel3D.Shape - Enum in inra.ijpb.morphology: An enumeration of the different possible structuring element shapes.
surfaceArea - Variable in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D.Result: The surface area of the region
surfaceArea() - Method in class inra.ijpb.geometry.Sphere
surfaceArea(ImageStack, double[], int) - Static method in class inra.ijpb.measure.GeometricMeasures3D: Deprecated.

Computes the surface area of each label in the 3D image, using the specified resolution, and the given number of directions.
surfaceArea(ImageStack, Calibration, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Measures the surface area of a single region within a 3D binary image.
surfaceAreaCrofton(ImageStack, int[], double[], int) - Static method in class inra.ijpb.measure.GeometricMeasures3D: Deprecated.
use IntrinsicVolumes3D instead
surfaceAreaCrofton(ImageStack, int, double[], int) - Static method in class inra.ijpb.measure.GeometricMeasures3D: Deprecated.
use IntrinsicVolumes3D instead
surfaceAreaCroftonD3(ImageStack, double[]) - Static method in class inra.ijpb.measure.GeometricMeasures3D: Deprecated.
use IntrinsicVolumes3D instead
surfaceAreaDensity(ImageStack, Calibration, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Measures the surface area density of a single region within a 3D binary image.
surfaceAreaLut(Calibration, int) - Static method in class inra.ijpb.measure.region3d.IntrinsicVolumes3DUtils: Computes the Look-up table that is used to compute surface area.
surfaceAreaLut(Calibration, int) - Static method in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D: Deprecated.
use IntrinsicVolumes3DUtils instead
surfaceAreas(ImageStack, int[], Calibration, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D: Measures the surface area of each region within a label image.
SVENSSON_3_4_5_7 - inra.ijpb.binary.distmap.ChamferMasks3D: Use weights 3 for orthogonal neighbors and 4 for diagonal neighbors, and 5 for cube-diagonals, and 7 for (2,1,1) shifts.
SVENSSON_3_4_5_7 - Static variable in class inra.ijpb.binary.distmap.ChamferMask3D: Use weights 3 for orthogonal neighbors, 4 for square-diagonal neighbors, 5 for cube-diagonals, and 7 for (2,1,1) shifts.

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