Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y
All Classes|All Packages

E

eigenVectors() - Method in class inra.ijpb.measure.region3d.EquivalentEllipsoid.Moments3D

Return the eigen vector of the moments.

eigenVectors() - Method in class inra.ijpb.measure.region3d.InertiaEllipsoid.InertiaMoments3D

Deprecated.

Ellipse - Class in inra.ijpb.geometry

Represents a 2D ellipse.

Ellipse(double, double, double, double, double) - Constructor for class inra.ijpb.geometry.Ellipse

Creates a new ellipse.

Ellipse(Point2D, double, double, double) - Constructor for class inra.ijpb.geometry.Ellipse

Creates a new ellipse.

ellipseElongation - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features

The boolean flag for computing ellipse elongation.

Ellipsoid - Class in inra.ijpb.geometry

An ellipsoid in the 3D space, defined by a center, three radius, and three orientation angles.

Ellipsoid(double, double, double, double, double, double, double, double, double) - Constructor for class inra.ijpb.geometry.Ellipsoid

Creates a new 3D Ellipsoid

Ellipsoid(Point3D, double, double, double) - Constructor for class inra.ijpb.geometry.Ellipsoid

Creates a new 3D Ellipsoid parallel to the three main axes.

Ellipsoid(Point3D, double, double, double, double, double, double) - Constructor for class inra.ijpb.geometry.Ellipsoid

Creates a new 3D Ellipsoid

EllipsoidStrel - Class in inra.ijpb.morphology.strel

A 3D structuring element with an ellipsoidal shape, oriented along the three main axes of the image.

elongations(Ellipsoid[]) - Static method in class inra.ijpb.geometry.Ellipsoid

Computes the three elongation factors for an array of ellipsoids.

EQ - inra.ijpb.plugins.LabelSizeFilteringPlugin.Operation

The operator for "equal"

EQ - Static variable in interface inra.ijpb.label.select.RelationalOperator

Implementation of the "Equal" operator.

equals(Object) - Method in class inra.ijpb.data.Cursor2D

equals(Object) - Method in class inra.ijpb.data.Cursor3D

equals(Object) - Method in class inra.ijpb.label.RegionAdjacencyGraph.LabelPair

equivalentEllipse - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features

The boolean flag for computing equivalent ellipse.

EquivalentEllipse - Class in inra.ijpb.measure.region2d

Compute parameters of equivalent ellipse from binar or label images.

EquivalentEllipse() - Constructor for class inra.ijpb.measure.region2d.EquivalentEllipse

Default constructor.

EquivalentEllipsePlugin - Class in inra.ijpb.plugins

Computes equivalent ellipse of each region within a label image.

EquivalentEllipsePlugin() - Constructor for class inra.ijpb.plugins.EquivalentEllipsePlugin

equivalentEllipses(ImageProcessor, int[], Calibration) - Static method in class inra.ijpb.measure.region2d.EquivalentEllipse

Computes equivalent ellipse of each region in input label image.

equivalentEllipsoid() - Method in class inra.ijpb.measure.region3d.EquivalentEllipsoid.Moments3D

Converts the 3D moments stored in this instance into a 3D ellipsoid.

equivalentEllipsoid() - Method in class inra.ijpb.measure.region3d.InertiaEllipsoid.InertiaMoments3D

Deprecated.

Computes ellipsoid with same moments as those stored in this class.

EquivalentEllipsoid - Class in inra.ijpb.measure.region3d

Compute the parameters of 3D ellipsoids that has the same moments up to the second order than the region(s) within a 3D binary / label image.

EquivalentEllipsoid() - Constructor for class inra.ijpb.measure.region3d.EquivalentEllipsoid

Default constructor

EquivalentEllipsoid.Moments3D - Class in inra.ijpb.measure.region3d

Encapsulates the results of 3D Moments computations.

EquivalentEllipsoidPlugin - Class in inra.ijpb.plugins

Computes equivalent ellipsoid for each region with a binary or label 3D image.

EquivalentEllipsoidPlugin() - Constructor for class inra.ijpb.plugins.EquivalentEllipsoidPlugin

equivalentEllipsoids(ImageStack, int[], Calibration) - Static method in class inra.ijpb.measure.region3d.EquivalentEllipsoid

Computes equivalent ellipsoid of each region in the input 3D label image.

erosion(ImagePlus, Strel3D) - Static method in class inra.ijpb.morphology.Morphology

Performs morphological erosion on the input image.

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel3D

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractSeparableStrel3D

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractStrel

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.AbstractStrel3D

Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value.

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.BallStrel

Performs erosion with a ball structuring element by calling the ImageJ Filters3D.filter method, using Filters3D.MIN option.

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.Cross3DStrel

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.EllipsoidStrel

Performs erosion with a ball structuring element by calling the ImageJ Filters3D.filter method, using Filters3D.MIN option.

erosion(ImageStack) - Method in class inra.ijpb.morphology.strel.ExtrudedStrel

erosion(ImageStack) - Method in interface inra.ijpb.morphology.Strel3D

Performs an morphological erosion of the input image with this structuring element, and returns the result in a new ImageStack.

erosion(ImageStack, Strel3D) - Static method in class inra.ijpb.morphology.Morphology

Performs morphological erosion on the input 3D image.

erosion(ImageProcessor) - Method in class inra.ijpb.morphology.directional.OrientedLineStrel

erosion(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractInPlaceStrel

erosion(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractSeparableStrel

erosion(ImageProcessor) - Method in class inra.ijpb.morphology.strel.AbstractStrel

Implements a default algorithm for erosion, that consists in iterating over the neighbors of each pixel to compute the minimum value.

erosion(ImageProcessor) - Method in interface inra.ijpb.morphology.Strel

Performs an morphological erosion of the input image with this structuring element, and returns the result in a new ImageProcessor.

erosion(ImageProcessor, Strel) - Static method in class inra.ijpb.morphology.Morphology

Performs morphological erosion on the input image.

Erosion - Class in inra.ijpb.morphology.filter

Performs morphological erosion on 2D/3D images.

Erosion(Strel3D) - Constructor for class inra.ijpb.morphology.filter.Erosion

Creates a new Morphological Erosion operator with the specified structuring element.

EROSION - inra.ijpb.morphology.directional.DirectionalFilter.Operation

The morphological erosion operation

EROSION - inra.ijpb.morphology.Morphology.Operation

Morphological erosion (local minima)

EROSION - inra.ijpb.plugins.LabelMapMorphologicalFilteringPlugin.Operation

Morphological erosion (local minima)

euclideanDistance(Cursor2D) - Method in class inra.ijpb.data.Cursor2D

Calculate Euclidean distance to another cursor

euclideanDistance(Cursor3D) - Method in class inra.ijpb.data.Cursor3D

Calculate Euclidean distance to another cursor

euclideanDistance(PixelRecord) - Method in class inra.ijpb.data.PixelRecord

Calculate Euclidean distance to another pixel record

euclideanDistance(VoxelRecord) - Method in class inra.ijpb.data.VoxelRecord

Calculate Euclidean distance to another voxel record

eulerNumber - Variable in class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D.Result

the Euler Number of the region.

eulerNumber - Variable in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D.Result

The Euler Number of the region

eulerNumber - Variable in class inra.ijpb.plugins.AnalyzeRegions.Features

The boolean flag for computing Euler number.

eulerNumber(ImageStack, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D

Measures the Euler number of the region within the binary image, using the specified connectivity.

eulerNumber(ImageStack, int[], int) - Static method in class inra.ijpb.measure.GeometricMeasures3D

Deprecated.

use IntrinsicVolumes3D.eulerNumbers(ImageStack, int[], int) instead

eulerNumber(ImageProcessor, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes2D

Measures the Euler number of the region within the binary image, using the specified connectivity.

eulerNumberDensity(ImageStack, Calibration, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D

Measures the Euler number density of the foreground region within a binary image, using the specified connectivity.

eulerNumberDensity(ImageProcessor, Calibration, int) - Static method in class inra.ijpb.measure.IntrinsicVolumes2D

Measures the Euler number density of the foreground region within a binary image, using the specified connectivity.

eulerNumberIntLut(int) - Static method in class inra.ijpb.measure.region2d.IntrinsicVolumes2DUtils

Computes the Look-up table that is used to compute Euler number density.

eulerNumberIntLut(int) - Static method in class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D

Deprecated.

use IntrinsicVolumes2DUtils instead

eulerNumberLut(int) - Static method in class inra.ijpb.measure.region2d.IntrinsicVolumes2DUtils

Computes the Look-up table that is used to compute Euler number density.

eulerNumberLut(int) - Static method in class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D

Deprecated.

use IntrinsicVolumes2DUtils instead

eulerNumberLut(int) - Static method in class inra.ijpb.measure.region3d.IntrinsicVolumes3DUtils

Computes the look-up table for measuring Euler number in binary 3D image, depending on the connectivity.

eulerNumberLut(int) - Static method in class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D

Deprecated.

use IntrinsicVolumes3DUtils instead

eulerNumbers(ImageStack, int[], int) - Static method in class inra.ijpb.measure.IntrinsicVolumes3D

Measures the Euler number of each region given in the "labels" argument, using the specified connectivity.

eulerNumbers(ImageProcessor, int[], int) - Static method in class inra.ijpb.measure.IntrinsicVolumes2D

Measures the Euler number of each region given in the "labels" argument, using the specified connectivity.

evaluate(double, double) - Method in interface inra.ijpb.label.select.RelationalOperator

Evaluates this operator from two floating-point values.

evaluate(int, int) - Method in interface inra.ijpb.label.select.RelationalOperator

Evaluates this operator from two integer values.

exec(ImagePlus, int) - Method in class inra.ijpb.plugins.MicrostructureAnalysisPlugin

Deprecated.

specify porosity

exec(ImagePlus, int) - Method in class inra.ijpb.plugins.RegionMorphometryPlugin

Deprecated.

exec(ImagePlus, int, boolean) - Method in class inra.ijpb.plugins.MicrostructureAnalysisPlugin

Deprecated.

use process method instead

exec(ImagePlus, int, int, int, int, BorderManager) - Method in class inra.ijpb.plugins.ExtendBordersPlugin

Deprecated.

exec(ImagePlus, short[]) - Method in class inra.ijpb.plugins.MaxInscribedCirclePlugin

Deprecated.

replaced by process method

exec(ImagePlus, ImagePlus, String, float[]) - Method in class inra.ijpb.plugins.GeodesicDistanceMapPlugin

Deprecated.

exec(ImagePlus, ImagePlus, String, float[], boolean) - Method in class inra.ijpb.plugins.GeodesicDistanceMapPlugin

Deprecated.

use process method instead

exec(ImagePlus, ImagePlus, String, short[], boolean) - Method in class inra.ijpb.plugins.GeodesicDistanceMapPlugin

Deprecated.

use process method instead

exec(ImagePlus, Morphology.Operation, Strel) - Method in class inra.ijpb.plugins.MorphologicalFilterPlugin

Deprecated.

use the process method instead

expandLabels(ImageStack, float) - Static method in class inra.ijpb.plugins.ExpandLabelsPlugin

Expand labels by a given factor

expandLabels(ImageProcessor, float) - Static method in class inra.ijpb.plugins.ExpandLabelsPlugin

Expand labels by a given factor

ExpandLabelsPlugin - Class in inra.ijpb.plugins

Creates a new image larger than the original one, and copies each label identically but shifted by a given dilation coefficient.

ExpandLabelsPlugin() - Constructor for class inra.ijpb.plugins.ExpandLabelsPlugin

ExtendBordersPlugin - Class in inra.ijpb.plugins

Pads the current image with the specified value or color.

ExtendBordersPlugin() - Constructor for class inra.ijpb.plugins.ExtendBordersPlugin

EXTENDED_MAXIMA - inra.ijpb.plugins.ExtendedMinAndMax3DPlugin.Operation

Extended maxima operation

EXTENDED_MAXIMA - inra.ijpb.plugins.ExtendedMinAndMaxPlugin.Operation

Extended maxima operation

EXTENDED_MINIMA - inra.ijpb.plugins.ExtendedMinAndMax3DPlugin.Operation

Extended minima operation

EXTENDED_MINIMA - inra.ijpb.plugins.ExtendedMinAndMaxPlugin.Operation

Extended minima operation

extendedMaxima(ImageStack, double) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended maxima in grayscale image image, keeping maxima with the specified dynamic, and using the default connectivity.

extendedMaxima(ImageStack, double, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended maxima in grayscale image image, keeping maxima with the specified dynamic, and using the specified connectivity.

extendedMaxima(ImageStack, double, int, ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended maxima in the grayscale image image, keeping maxima with the specified dynamic, restricted to the non-zero voxels of the binary mask, and using the specified connectivity.

extendedMaxima(ImageStack, double, ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended maxima in the grayscale image image, keeping maxima with the specified dynamic, restricted to the non-zero voxels of the binary mask, and using the default connectivity.

extendedMaxima(ImageProcessor, double) - Static method in class inra.ijpb.morphology.MinimaAndMaxima

Computes the extended maxima in grayscale image image, keeping maxima with the specified dynamic, and using the default connectivity.

extendedMaxima(ImageProcessor, double, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima

Computes the extended maxima in grayscale image image, keeping maxima with the specified dynamic, and using the specified connectivity.

ExtendedMinAndMax3DPlugin - Class in inra.ijpb.plugins

Plugin for computing regional minima and maxima in grayscale images.

ExtendedMinAndMax3DPlugin() - Constructor for class inra.ijpb.plugins.ExtendedMinAndMax3DPlugin

ExtendedMinAndMax3DPlugin.Operation - Enum in inra.ijpb.plugins

A customized enumeration to choose between extended minima or maxima.

ExtendedMinAndMaxPlugin - Class in inra.ijpb.plugins

Plugin for computing extended minima and maxima in grayscale images.

ExtendedMinAndMaxPlugin() - Constructor for class inra.ijpb.plugins.ExtendedMinAndMaxPlugin

ExtendedMinAndMaxPlugin.Operation - Enum in inra.ijpb.plugins

A customized enumeration to choose between extended minima or maxima.

extendedMinima(ImageStack, double) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended minima in grayscale image image, keeping minima with the specified dynamic, and using the default connectivity.

extendedMinima(ImageStack, double, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D

Computes the extended minima in grayscale image image, keeping minima with the specified dynamic, and using the specified connectivity.

extendedMinima(ImageProcessor, double) - Static method in class inra.ijpb.morphology.MinimaAndMaxima

Computes the extended minima in grayscale image image, keeping minima with the specified dynamic, and using the default connectivity.

extendedMinima(ImageProcessor, double, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima

Computes the extended minima in grayscale image image, keeping minima with the specified dynamic, and using the specified connectivity.

extendedMinimaWatershed(ImagePlus, int, int) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageStack, int, int) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageStack, int, int, int) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageStack, ImageStack, int, int, boolean) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageStack, ImageStack, int, int, int, boolean) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageProcessor, int, int) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageProcessor, int, int, int) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageProcessor, ImageProcessor, int, int, boolean) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

extendedMinimaWatershed(ImageProcessor, ImageProcessor, int, int, int, boolean) - Static method in class inra.ijpb.watershed.ExtendedMinimaWatershed

Computes watershed on a gray scale image after imposition of extended minima.

ExtendedMinimaWatershed - Class in inra.ijpb.watershed

Static methods for directly computing result of watershed after imposition of extended minima.

ExtendedMinimaWatershed() - Constructor for class inra.ijpb.watershed.ExtendedMinimaWatershed

EXTERNAL_GRADIENT - inra.ijpb.morphology.Morphology.Operation

Morphological internal gradient (difference of original image with erosion)

externalGradient(ImagePlus, Strel3D) - Static method in class inra.ijpb.morphology.Morphology

Computes the morphological external gradient of the input image.

externalGradient(ImageStack, Strel3D) - Static method in class inra.ijpb.morphology.Morphology

Computes the morphological external gradient of the input 3D image.

externalGradient(ImageProcessor, Strel) - Static method in class inra.ijpb.morphology.Morphology

Computes the morphological external gradient of the input image.

ExternalGradient - Class in inra.ijpb.morphology.filter

Performs morphological external gradient on 2D/3D images.

ExternalGradient(Strel3D) - Constructor for class inra.ijpb.morphology.filter.ExternalGradient

Creates a new External Gradient operator with the specified structuring element.

extractPixelValues(ImageProcessor, double, double) - Method in class inra.ijpb.watershed.WatershedTransform2D

Extract pixel values from input image such that they have value h, hMin <= h <= hMax.

extractPixelValues(ImageProcessor, ImageProcessor, int[][]) - Method in class inra.ijpb.watershed.MarkerControlledWatershedTransform2D

Extract pixel values from input and labeled marker images.

extractPixelValuesPriorityQueue(ImageProcessor, ImageProcessor, int[][]) - Method in class inra.ijpb.watershed.MarkerControlledWatershedTransform2D

Extract pixel values from input and seed images

extractVoxelValues(ImageStack, double, double) - Method in class inra.ijpb.watershed.WatershedTransform3D

Extract voxel values from input image such that they have value h, hMin <= h <= hMax.

extractVoxelValues(ImageStack, ImageStack, int[][][]) - Method in class inra.ijpb.watershed.MarkerControlledWatershedTransform3D

Extract voxel values from input and labeled marker images.

extractVoxelValuesPriorityQueue(ImageStack, ImageStack, int[][][]) - Method in class inra.ijpb.watershed.MarkerControlledWatershedTransform3D

Extract voxel values from input and seed images

ExtremaType - Enum in inra.ijpb.morphology.extrema

One of the two types of extrema.

ExtrudedStrel - Class in inra.ijpb.morphology.strel

Creates a 3D strel by replicating a 2D strel on a given number of slices.

ExtrudedStrel(Strel, int) - Constructor for class inra.ijpb.morphology.strel.ExtrudedStrel

Creates a 3D structuring element by extruding ("repeating") a 2D structuring element along the given number of slices.

ExtrudedStrel(Strel, int, int) - Constructor for class inra.ijpb.morphology.strel.ExtrudedStrel

Creates a 3D structuring element by extruding ("repeating") a 2D structuring element along the given number of slices.

A B C D E F G H I J K L M N O P Q R S T U V W X Y
All Classes|All Packages