Index
All Classes|All Packages
R
- radius() - Method in class inra.ijpb.geometry.Sphere
- radius1() - Method in class inra.ijpb.geometry.Ellipse
- radius1() - Method in class inra.ijpb.geometry.Ellipsoid
- radius2() - Method in class inra.ijpb.geometry.Ellipse
- radius2() - Method in class inra.ijpb.geometry.Ellipsoid
- radius3() - Method in class inra.ijpb.geometry.Ellipsoid
- recalibrate(Calibration) - Method in class inra.ijpb.measure.region2d.GeodesicDiameter.Result
-
Computes the result corresponding to the spatial calibration.
- reconstructByDilation(ImageStack, ImageStack) - Static method in class inra.ijpb.morphology.GeodesicReconstruction3D
-
Deprecated.Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.
- reconstructByDilation(ImageStack, ImageStack) - Static method in class inra.ijpb.morphology.Reconstruction3D
-
Static method to computes the morphological reconstruction by dilation of the marker image under the mask image.
- reconstructByDilation(ImageStack, ImageStack, int) - Static method in class inra.ijpb.morphology.GeodesicReconstruction3D
-
Deprecated.Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.
- reconstructByDilation(ImageStack, ImageStack, int) - Static method in class inra.ijpb.morphology.Reconstruction3D
-
Static method to computes the morphological reconstruction by dilation of the marker image under the mask image.
- reconstructByDilation(ImageStack, ImageStack, int, ImageStack) - Static method in class inra.ijpb.morphology.GeodesicReconstruction3D
-
Deprecated.Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image, but restricted to a binary mask.
- reconstructByDilation(ImageStack, ImageStack, int, ImageStack) - Static method in class inra.ijpb.morphology.Reconstruction3D
-
Static method to computes the morphological reconstruction by dilation of the marker image under the mask image, but restricted to a binary mask.
- reconstructByDilation(ImageProcessor, ImageProcessor) - Static method in class inra.ijpb.morphology.Reconstruction
-
Static method to computes the morphological reconstruction by dilation of the marker image under the mask image.
- reconstructByDilation(ImageProcessor, ImageProcessor, int) - Static method in class inra.ijpb.morphology.Reconstruction
-
Static method to computes the morphological reconstruction by dilation of the marker image under the mask image.
- reconstructByErosion(ImageStack, ImageStack) - Static method in class inra.ijpb.morphology.GeodesicReconstruction3D
-
Deprecated.Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.
- reconstructByErosion(ImageStack, ImageStack) - Static method in class inra.ijpb.morphology.Reconstruction3D
-
Static method to computes the morphological reconstruction by erosion of the marker image over the mask image.
- reconstructByErosion(ImageStack, ImageStack, int) - Static method in class inra.ijpb.morphology.GeodesicReconstruction3D
-
Deprecated.Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.
- reconstructByErosion(ImageStack, ImageStack, int) - Static method in class inra.ijpb.morphology.Reconstruction3D
-
Static method to computes the morphological reconstruction by erosion of the marker image over the mask image.
- reconstructByErosion(ImageProcessor, ImageProcessor) - Static method in class inra.ijpb.morphology.Reconstruction
-
Static method to computes the morphological reconstruction by erosion of the marker image over the mask image.
- reconstructByErosion(ImageProcessor, ImageProcessor, int) - Static method in class inra.ijpb.morphology.Reconstruction
-
Static method to computes the morphological reconstruction by erosion of the marker image over the mask image.
- Reconstruction - Class in inra.ijpb.morphology
-
Morphological reconstruction for grayscale or binary images.
- Reconstruction3D - Class in inra.ijpb.morphology
-
Morphological reconstruction for 8-bits grayscale or binary stacks.
- record(String, String...) - Static method in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed
-
Macro-record a specific command.
- record(String, String...) - Static method in class inra.ijpb.plugins.LabelToValuePlugin
-
Macro-record a specific command.
- record(String, String...) - Static method in class inra.ijpb.plugins.MorphologicalSegmentation
-
Macro-record a specific command.
- RED - inra.ijpb.color.CommonColors
-
The red color
- RED - inra.ijpb.util.CommonColors
-
Deprecated.The red color
- REDGREEN - inra.ijpb.color.ColorMaps.CommonLabelMaps
-
Colormap containing Red to green values
- RegionAdjacencyGraph - Class in inra.ijpb.label
-
Contains several methods for extracting the set of adjacencies between regions in a label image.
- RegionAdjacencyGraph.LabelPair - Class in inra.ijpb.label
-
Used to stores the adjacency information between two regions.
- RegionAdjacencyGraphPlugin - Class in inra.ijpb.plugins
- RegionAdjacencyGraphPlugin() - Constructor for class inra.ijpb.plugins.RegionAdjacencyGraphPlugin
- REGIONAL_MAXIMA - inra.ijpb.plugins.RegionalMinAndMax3DPlugin.Operation
-
Regional maxima
- REGIONAL_MAXIMA - inra.ijpb.plugins.RegionalMinAndMaxPlugin.Operation
-
Regional maxima
- REGIONAL_MINIMA - inra.ijpb.plugins.RegionalMinAndMax3DPlugin.Operation
-
Regional minima
- REGIONAL_MINIMA - inra.ijpb.plugins.RegionalMinAndMaxPlugin.Operation
-
Regional minima
- RegionalExtrema3DAlgo - Class in inra.ijpb.morphology.extrema
-
Interface for computing regional extrema (regional minima and regional maxima).
- RegionalExtrema3DAlgo() - Constructor for class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo
-
Creates a new algorithm for computing regional extrema, that computes regional minima with connectivity 6.
- RegionalExtrema3DAlgo(ExtremaType, int) - Constructor for class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo
-
Creates a new algorithm for computing regional extrema, by choosing type of minima and connectivity.
- RegionalExtrema3DByFlooding - Class in inra.ijpb.morphology.extrema
-
Computes regional extrema in 3D images using flooding algorithm.
- RegionalExtrema3DByFlooding() - Constructor for class inra.ijpb.morphology.extrema.RegionalExtrema3DByFlooding
- RegionalExtremaAlgo - Class in inra.ijpb.morphology.extrema
-
Interface for appying regional extrema (regional minima and maxima).
- RegionalExtremaAlgo() - Constructor for class inra.ijpb.morphology.extrema.RegionalExtremaAlgo
-
Creates a new algorithm for computing regional extrema, that computes regional minima with connectivity 4.
- RegionalExtremaAlgo(ExtremaType, int) - Constructor for class inra.ijpb.morphology.extrema.RegionalExtremaAlgo
-
Creates a new algorithm for computing regional extrema, by choosing type of minima and connectivity.
- RegionalExtremaByFlooding - Class in inra.ijpb.morphology.extrema
-
Computes regional extrema in planar images using flooding algorithm.
- RegionalExtremaByFlooding() - Constructor for class inra.ijpb.morphology.extrema.RegionalExtremaByFlooding
- regionalMaxima(ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional maxima in 3D stack
image, using the default connectivity. - regionalMaxima(ImageStack, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional maxima in grayscale image
stack, using the specified connectivity. - regionalMaxima(ImageStack, int, ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional maxima in grayscale image
stack, using the specified connectivity and binary mask. - regionalMaxima(ImageProcessor) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional maxima in grayscale image
image, using the default connectivity. - regionalMaxima(ImageProcessor, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional maxima in grayscale image
image, using the specified connectivity. - regionalMaximaByReconstruction(ImageStack, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional maxima in 3D image
stack, using the specified connectivity, and a slower algorithm (used for testing). - regionalMaximaByReconstruction(ImageProcessor, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional maxima in grayscale image
image, using the specified connectivity, and a slower algorithm (used for testing). - RegionalMinAndMax3DPlugin - Class in inra.ijpb.plugins
-
Plugin for computing regional minima and maxima in grayscale images.
- RegionalMinAndMax3DPlugin() - Constructor for class inra.ijpb.plugins.RegionalMinAndMax3DPlugin
- RegionalMinAndMax3DPlugin.Operation - Enum in inra.ijpb.plugins
-
A customized enumeration to choose between regional minima or maxima.
- RegionalMinAndMaxPlugin - Class in inra.ijpb.plugins
-
Plugin for computing regional minima and maxima in grayscale images.
- RegionalMinAndMaxPlugin() - Constructor for class inra.ijpb.plugins.RegionalMinAndMaxPlugin
- RegionalMinAndMaxPlugin.Operation - Enum in inra.ijpb.plugins
-
A customized enumeration to choose between regional minima or maxima.
- regionalMinima(ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional minima in 3D image
stack, using the default connectivity. - regionalMinima(ImageStack, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional minima in 3D stack
image, using the specified connectivity. - regionalMinima(ImageStack, int, ImageStack) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional minima in 3D image
stack, using the specified connectivity. - regionalMinima(ImageProcessor) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional minima in grayscale image
image, using the default connectivity. - regionalMinima(ImageProcessor, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional minima in grayscale image
image, using the specified connectivity. - regionalMinimaByReconstruction(ImageStack, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima3D
-
Computes the regional minima in grayscale image
image, using the specified connectivity, and a slower algorithm (used for testing). - regionalMinimaByReconstruction(ImageProcessor, int) - Static method in class inra.ijpb.morphology.MinimaAndMaxima
-
Computes the regional minima in grayscale image
image, using the specified connectivity, and a slower algorithm (used for testing). - RegionAnalyzer<T> - Interface in inra.ijpb.measure
-
Common interface for classes devoted to the extraction of information from each region of label or binary image.
- RegionAnalyzer2D<T> - Class in inra.ijpb.measure.region2d
-
Base implementation of RegionAnalyzer interface for planar binary/label images.
- RegionAnalyzer2D() - Constructor for class inra.ijpb.measure.region2d.RegionAnalyzer2D
- RegionAnalyzer3D<T> - Class in inra.ijpb.measure.region3d
-
Base implementation of RegionAnalyzer interface for 3D binary/label images.
- RegionAnalyzer3D() - Constructor for class inra.ijpb.measure.region3d.RegionAnalyzer3D
- RegionBoundaries - Class in inra.ijpb.measure.region2d
-
Utility functions for computing position of boundary points/corners of regions within binary or label images.
- RegionBoundaries3D - Class in inra.ijpb.measure.region3d
-
Utility functions for computing position of boundary points/corners of regions within 3D binary or label images.
- RegionBoundariesLabelingPlugin - Class in inra.ijpb.plugins
- RegionBoundariesLabelingPlugin() - Constructor for class inra.ijpb.plugins.RegionBoundariesLabelingPlugin
- regionComponentsLabeling(ImagePlus, int, int, int) - Static method in class inra.ijpb.label.LabelImages
-
Computes the labels in the binary 2D or 3D image contained in the given ImagePlus, and computes the maximum label to set up the display range of the resulting ImagePlus.
- regionComponentsLabeling(ImageStack, int, int, int) - Static method in class inra.ijpb.label.LabelImages
-
Computes the labels of the connected components in the given 3D binary image.
- regionComponentsLabeling(ImageProcessor, int, int, int) - Static method in class inra.ijpb.label.LabelImages
-
Computes the labels of the connected components in the given planar binary image.
- RegionMorphometryPlugin - Class in inra.ijpb.plugins
-
Deprecated.replaced by AnalyzeRegions
- RegionMorphometryPlugin() - Constructor for class inra.ijpb.plugins.RegionMorphometryPlugin
-
Deprecated.
- regionsCorners(ImageStack, int[]) - Static method in class inra.ijpb.measure.region3d.RegionBoundaries3D
-
Returns a set of points located at the corners of a binary particle.
- regionsCornersArray(ImageStack, int[]) - Static method in class inra.ijpb.measure.region3d.RegionBoundaries3D
-
Returns a set of points located at the corners of a binary particle.
- RelationalOperator - Interface in inra.ijpb.label.select
-
Implementation of a relational operator that computes a boolean value from two scalar input values.
- remapLabels(ImagePlus) - Static method in class inra.ijpb.label.LabelImages
-
Ensures that the labels in the given label image range from 1 to Lmax.
- remapLabels(ImageStack) - Static method in class inra.ijpb.label.LabelImages
-
Ensures that the labels in the given label image range from 1 to Lmax.
- remapLabels(ImageProcessor) - Static method in class inra.ijpb.label.LabelImages
-
Ensures that the labels in the given label image range from 1 to Lmax.
- RemapLabelsPlugin - Class in inra.ijpb.plugins
-
Ensures the labels in the current label image are numbered between 1 and LMax, where LMax is the number of labels.
- RemapLabelsPlugin() - Constructor for class inra.ijpb.plugins.RemapLabelsPlugin
- remove(ImagePlus, boolean, boolean, boolean, boolean, boolean, boolean) - Static method in class inra.ijpb.plugins.RemoveBorderLabelsPlugin
-
Remove labels in the border of the image
- removeAlgoListener(AlgoListener) - Method in interface inra.ijpb.algo.Algo
- removeAlgoListener(AlgoListener) - Method in class inra.ijpb.algo.AlgoStub
- removeBorderLabels(ImagePlus) - Static method in class inra.ijpb.label.LabelImages
-
Removes all regions that touch the borders of the image.
- removeBorderLabels(ImageStack) - Static method in class inra.ijpb.label.LabelImages
-
Removes all regions that touch the borders of the image.
- removeBorderLabels(ImageProcessor) - Static method in class inra.ijpb.label.LabelImages
-
Removes all regions that touch the borders of the image.
- RemoveBorderLabelsPlugin - Class in inra.ijpb.plugins
-
Removes all labels that touch the selected border, and replace them with value 0.
- RemoveBorderLabelsPlugin() - Constructor for class inra.ijpb.plugins.RemoveBorderLabelsPlugin
- removeLabels(ImagePlus, Roi, boolean) - Static method in class inra.ijpb.label.LabelImages
-
Remove labels selected by freehand or point ROIs (in place).
- removeLargestLabel(ImagePlus) - Static method in class inra.ijpb.label.LabelImages
-
Removes the regions corresponding to the largest label from a label image.
- removeLargestLabel(ImageStack) - Static method in class inra.ijpb.label.LabelImages
-
Removes the regions corresponding to the largest label from a label image.
- removeLargestLabel(ImageProcessor) - Static method in class inra.ijpb.label.LabelImages
-
Removes the regions corresponding to the largest label from a label image.
- RemoveLargestLabelPlugin - Class in inra.ijpb.plugins
-
Removes all the labels in a 2D/3D image but the largest one.
- RemoveLargestLabelPlugin() - Constructor for class inra.ijpb.plugins.RemoveLargestLabelPlugin
- removeLargestRegion(ImagePlus) - Static method in class inra.ijpb.binary.BinaryImages
-
Returns a binary image in which the largest region has been replaced by background.
- removeLargestRegion(ImageStack) - Static method in class inra.ijpb.binary.BinaryImages
-
Returns a binary image in which the largest region has been replaced by the background value.
- removeLargestRegion(ImageProcessor) - Static method in class inra.ijpb.binary.BinaryImages
-
Returns a binary image in which the largest region has been replaced by the background value.
- RemoveLargestRegionPlugin - Class in inra.ijpb.plugins
-
Removes the largest region of a binary 2D or 3D image.
- RemoveLargestRegionPlugin() - Constructor for class inra.ijpb.plugins.RemoveLargestRegionPlugin
- replaceLabels(ImagePlus, float[], float) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by the value 0.
- replaceLabels(ImagePlus, int[], int) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by a new value.
- replaceLabels(ImageStack, float[], float) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by the specified value.
- replaceLabels(ImageStack, int[], int) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by a new value.
- replaceLabels(ImageProcessor, float[], float) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by the value 0.
- replaceLabels(ImageProcessor, int[], int) - Static method in class inra.ijpb.label.LabelImages
-
Replace all values specified in label array by a new value.
- ReplaceLabelValues - Class in inra.ijpb.label.edit
-
Provides several methods for replacing label values within a label map (stored as 8-, 16- or 32-bits).
- ReplaceLabelValues() - Constructor for class inra.ijpb.label.edit.ReplaceLabelValues
- ReplaceLabelValuesPlugin - Class in inra.ijpb.plugins
-
Replaces the value of selected label(s) by a given value, for 2D/3D images, for gray8, gray16 and float images.
- ReplaceLabelValuesPlugin() - Constructor for class inra.ijpb.plugins.ReplaceLabelValuesPlugin
- replaceValue(ImagePlus, double, double) - Static method in class inra.ijpb.data.image.Images3D
-
Deprecated.
- replaceValue(ImagePlus, double, double) - Static method in class inra.ijpb.data.image.ImageUtils
-
Replaces the elements of an image with a given value by a new value.
- replaceValue(ImageStack, double, double) - Static method in class inra.ijpb.data.image.ImageUtils
-
Replaces the elements of a 3D image with a given value by a new value.
- replaceValue(ImageProcessor, double, double) - Static method in class inra.ijpb.data.image.ImageUtils
-
Replaces the elements of a 2D image with a given value by a new value.
- ReplaceValuePlugin - Class in inra.ijpb.plugins
-
Simple plugin to replace a value by another one, for 2D/3D images, for gray8, gray16 and float images.
- ReplaceValuePlugin() - Constructor for class inra.ijpb.plugins.ReplaceValuePlugin
- REPLICATED - inra.ijpb.data.border.BorderManager.Type
-
replicates nearest pixel to populate border
- REPLICATED - inra.ijpb.data.border.BorderManager3D.Type
-
replicates nearest pixel to populate border
- ReplicatedBorder - Class in inra.ijpb.data.border
-
Assess pixel outside image bounds have same value as the closest pixel on image border.
- ReplicatedBorder(ImageProcessor) - Constructor for class inra.ijpb.data.border.ReplicatedBorder
-
Creates a new Replicating Border Manager
- ReplicatedBorder3D - Class in inra.ijpb.data.border
-
Assess pixel outside image bounds have same value as the closest pixel on image border.
- ReplicatedBorder3D(ImageStack) - Constructor for class inra.ijpb.data.border.ReplicatedBorder3D
-
Creates a new Replicating Border Manager
- Result() - Constructor for class inra.ijpb.measure.region2d.AverageThickness.Result
- Result() - Constructor for class inra.ijpb.measure.region2d.GeodesicDiameter.Result
- Result() - Constructor for class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D.Result
-
Default empty constructor.
- Result() - Constructor for class inra.ijpb.measure.region3d.GeodesicDiameter3D.Result
- Result() - Constructor for class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D.Result
-
Empty constructor.
- Result(double, double) - Constructor for class inra.ijpb.measure.region2d.Convexity.Result
-
Creates a new result for storing convexity, based on the area and the convex area measures for the region.
- Result(double, double, double) - Constructor for class inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D.Result
-
Creates a new data class for storing intrinsic volume measurements.
- Result(double, double, double, double) - Constructor for class inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D.Result
-
Creates a new data class for storing intrinsic volume measurements.
- Result(ImageStack) - Constructor for class inra.ijpb.binary.conncomp.FloodFillComponentsLabeling3D.Result
-
Creates a new Result class from an (empty) labelMap.
- Result(ImageStack) - Constructor for class inra.ijpb.label.conncomp.LabelBoundariesLabeling3D.Result
-
Initializes a new Result instance from a boundary label map.
- Result(ImageProcessor) - Constructor for class inra.ijpb.label.conncomp.LabelBoundariesLabeling2D.Result
-
Initializes a new Result instance from a boundary label map.
- ResultsBuilder - Class in inra.ijpb.measure
-
Builder-type class to hold results Basically it will keep appending results to a larger results table Built in a way where we can chain them together
- ResultsBuilder() - Constructor for class inra.ijpb.measure.ResultsBuilder
-
Basic constructor.
- ResultsBuilder(ResultsTable) - Constructor for class inra.ijpb.measure.ResultsBuilder
-
Constructs a ResultsBuilder initializing the default table to the input one.
- reverse() - Method in class inra.ijpb.morphology.directional.OrientedLineStrel
-
Returns this structuring element, as oriented line structuring elements are symmetric by definition.
- reverse() - Method in class inra.ijpb.morphology.strel.BallStrel
- reverse() - Method in class inra.ijpb.morphology.strel.ChamferStrel
- reverse() - Method in class inra.ijpb.morphology.strel.ChamferStrel3D
- reverse() - Method in class inra.ijpb.morphology.strel.Cross3DStrel
- reverse() - Method in class inra.ijpb.morphology.strel.Cross3x3Strel
-
Returns this structuring element, as is is self-reverse.
- reverse() - Method in class inra.ijpb.morphology.strel.CubeStrel
- reverse() - Method in class inra.ijpb.morphology.strel.CuboidStrel
-
Returns a cuboidal structuring element with same size, but offset located symmetrically with respect to structuring element center.
- reverse() - Method in class inra.ijpb.morphology.strel.DiamondStrel
- reverse() - Method in class inra.ijpb.morphology.strel.DiskStrel
- reverse() - Method in class inra.ijpb.morphology.strel.EllipsoidStrel
-
Returns this instance, as an ellipsoid is symmetric.
- reverse() - Method in class inra.ijpb.morphology.strel.ExtrudedStrel
- reverse() - Method in interface inra.ijpb.morphology.strel.InPlaceStrel
-
The reverse structuring element of an InPlaceStrel is also an InPlaceStrel.
- reverse() - Method in interface inra.ijpb.morphology.strel.InPlaceStrel3D
-
The reverse structuring element of an InPlaceStrel is also an InPlaceStrel.
- reverse() - Method in class inra.ijpb.morphology.strel.LinearDepthStrel3D
-
Returns a linear horizontal line with same size and offset equal to size-offset-1.
- reverse() - Method in class inra.ijpb.morphology.strel.LinearDiagDownStrel
-
Returns a linear diagonal line with same size and offset equal to size-offset.
- reverse() - Method in class inra.ijpb.morphology.strel.LinearDiagUpStrel
-
Returns a linear diagonal line with same size and offset equal to size-offset.
- reverse() - Method in class inra.ijpb.morphology.strel.LinearHorizontalStrel
-
Returns a linear horizontal line with same size and offset equal to size-offset-1.
- reverse() - Method in class inra.ijpb.morphology.strel.LinearVerticalStrel
-
Returns a linear vertical line with same size and offset equal to size-offset-1.
- reverse() - Method in class inra.ijpb.morphology.strel.OctagonStrel
- reverse() - Method in interface inra.ijpb.morphology.Strel
-
Returns a reversed (i.e. symmetric wrt the origin) version of this structuring element.
- reverse() - Method in interface inra.ijpb.morphology.strel.SeparableStrel
-
The reversed structuring element of a separable strel is also separable.
- reverse() - Method in interface inra.ijpb.morphology.strel.SeparableStrel3D
-
The reversed structuring element of a separable strel is also separable.
- reverse() - Method in class inra.ijpb.morphology.strel.SquareStrel
- reverse() - Method in interface inra.ijpb.morphology.Strel3D
-
Returns a reversed (i.e. symmetric wrt the origin) version of this structuring element.
- RGB332 - inra.ijpb.color.ColorMaps.CommonLabelMaps
-
Colormap containing RGB332
- RIGHT - Static variable in class inra.ijpb.morphology.strel.ShiftedCross3x3Strel
-
A cross-shaped structuring element located on the right of the reference pixel.
- run(ImageProcessor) - Method in class inra.ijpb.plugins.AnalyzeRegions
- run(ImageProcessor) - Method in class inra.ijpb.plugins.AreaOpeningPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.ChamferDistanceMapPlugin
-
Apply the current filter settings to process the given image.
- run(ImageProcessor) - Method in class inra.ijpb.plugins.DirectionalFilteringPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.DistanceTransformWatershed
-
Apply the current filter settings to process the given image.
- run(ImageProcessor) - Method in class inra.ijpb.plugins.ExtendedMinAndMaxPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.GrayscaleAreaOpeningPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.GrayscaleAttributeFilteringPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.GrayscaleBoxDiameterOpeningPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.InteractiveGeodesicDistanceMap
-
Apply the current filter settings to process the given image.
- run(ImageProcessor) - Method in class inra.ijpb.plugins.InteractiveMorphologicalReconstruction
-
Apply the current filter settings to process the given image.
- run(ImageProcessor) - Method in class inra.ijpb.plugins.MicrostructureAnalysisPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.MorphologicalFilterPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.RegionalMinAndMaxPlugin
- run(ImageProcessor) - Method in class inra.ijpb.plugins.RegionMorphometryPlugin
-
Deprecated.
- run(String) - Method in class inra.ijpb.plugins.AnalyzeMicrostructure3D
- run(String) - Method in class inra.ijpb.plugins.AnalyzeRegions3D
- run(String) - Method in class inra.ijpb.plugins.AverageThicknessPlugin
- run(String) - Method in class inra.ijpb.plugins.BinaryOrLabelOverlayPlugin
-
The run method used to start the plugin from the GUI.
- run(String) - Method in class inra.ijpb.plugins.BinaryOverlayPlugin
- run(String) - Method in class inra.ijpb.plugins.BoundingBox3DPlugin
- run(String) - Method in class inra.ijpb.plugins.BoundingBoxPlugin
- run(String) - Method in class inra.ijpb.plugins.ChamferDistanceMap3DPlugin
- run(String) - Method in class inra.ijpb.plugins.ConvexifyPlugin
- run(String) - Method in class inra.ijpb.plugins.CropLabelPlugin
- run(String) - Method in class inra.ijpb.plugins.DilateLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.DistanceTransformWatershed3D
-
Plugin run method
- run(String) - Method in class inra.ijpb.plugins.DrawLabelsAsOverlayPlugin
- run(String) - Method in class inra.ijpb.plugins.DrawTableValuesPlugin
- run(String) - Method in class inra.ijpb.plugins.EquivalentEllipsePlugin
- run(String) - Method in class inra.ijpb.plugins.EquivalentEllipsoidPlugin
- run(String) - Method in class inra.ijpb.plugins.ExpandLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.ExtendBordersPlugin
- run(String) - Method in class inra.ijpb.plugins.ExtendedMinAndMax3DPlugin
- run(String) - Method in class inra.ijpb.plugins.FillHolesPlugin
- run(String) - Method in class inra.ijpb.plugins.FillLabelHolesPlugin
- run(String) - Method in class inra.ijpb.plugins.GeodesicDiameter3DPlugin
- run(String) - Method in class inra.ijpb.plugins.GeodesicDiameterPlugin
- run(String) - Method in class inra.ijpb.plugins.GeodesicDistanceMap3D
-
Deprecated.
- run(String) - Method in class inra.ijpb.plugins.GeodesicDistanceMap3DPlugin
- run(String) - Method in class inra.ijpb.plugins.GeodesicDistanceMapPlugin
- run(String) - Method in class inra.ijpb.plugins.GrayscaleAttributeFiltering3D
-
Plugin run method
- run(String) - Method in class inra.ijpb.plugins.ImposeMinAndMax3DPlugin
- run(String) - Method in class inra.ijpb.plugins.ImposeMinAndMaxPlugin
- run(String) - Method in class inra.ijpb.plugins.InertiaEllipsePlugin
-
Deprecated.
- run(String) - Method in class inra.ijpb.plugins.InertiaEllipsoidPlugin
-
Deprecated.
- run(String) - Method in class inra.ijpb.plugins.IntensityMeasures3D
- run(String) - Method in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed
- run(String) - Method in class inra.ijpb.plugins.InteractiveMorphologicalReconstruction3D
-
Apply the current filter settings to process the given image.
- run(String) - Method in class inra.ijpb.plugins.InterfaceSurfaceArea3D
- run(String) - Method in class inra.ijpb.plugins.KeepLargestLabelPlugin
- run(String) - Method in class inra.ijpb.plugins.KeepLargestRegionPlugin
- run(String) - Method in class inra.ijpb.plugins.KillBordersPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelAreaOpeningPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelBoundariesPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelEdition
-
Plug-in run method
- run(String) - Method in class inra.ijpb.plugins.LabelingPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelMapMorphologicalFilteringPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelOverlapMeasures
- run(String) - Method in class inra.ijpb.plugins.LabelSizeFilteringPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelToRgbPlugin
- run(String) - Method in class inra.ijpb.plugins.LabelToValuePlugin
- run(String) - Method in class inra.ijpb.plugins.MarkerControlledWatershed3DPlugin
-
Plugin run method to be called from ImageJ
- run(String) - Method in class inra.ijpb.plugins.MaxFeretDiameterPlugin
- run(String) - Method in class inra.ijpb.plugins.MaxInscribedCirclePlugin
- run(String) - Method in class inra.ijpb.plugins.MaxInscribedSpherePlugin
- run(String) - Method in class inra.ijpb.plugins.MergeLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.MorphologicalFilter3DPlugin
- run(String) - Method in class inra.ijpb.plugins.MorphologicalFilterCross3DPlugin
- run(String) - Method in class inra.ijpb.plugins.MorphologicalReconstruction3DPlugin
- run(String) - Method in class inra.ijpb.plugins.MorphologicalReconstructionPlugin
- run(String) - Method in class inra.ijpb.plugins.MorphologicalSegmentation
- run(String) - Method in class inra.ijpb.plugins.NeighborLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.OrientedBoundingBoxPlugin
- run(String) - Method in class inra.ijpb.plugins.ParticleAnalysis3DPlugin
-
Deprecated.
- run(String) - Method in class inra.ijpb.plugins.RegionAdjacencyGraphPlugin
- run(String) - Method in class inra.ijpb.plugins.RegionalMinAndMax3DPlugin
- run(String) - Method in class inra.ijpb.plugins.RegionBoundariesLabelingPlugin
- run(String) - Method in class inra.ijpb.plugins.RemapLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.RemoveBorderLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.RemoveLargestLabelPlugin
- run(String) - Method in class inra.ijpb.plugins.RemoveLargestRegionPlugin
- run(String) - Method in class inra.ijpb.plugins.ReplaceLabelValuesPlugin
- run(String) - Method in class inra.ijpb.plugins.ReplaceValuePlugin
- run(String) - Method in class inra.ijpb.plugins.SelectLabelsPlugin
- run(String) - Method in class inra.ijpb.plugins.SetLabelMapPlugin
- run(String) - Method in class inra.ijpb.plugins.SizeOpeningPlugin
- run(String) - Method in class inra.ijpb.plugins.Watershed3DPlugin
-
Plugin run method, to be called from ImageJ.
- RUN_SEGMENTATION - Static variable in class inra.ijpb.plugins.InteractiveMarkerControlledWatershed
-
name of the macro method to segment the current image based on the current parameters
- RUN_SEGMENTATION - Static variable in class inra.ijpb.plugins.MorphologicalSegmentation
-
name of the macro method to segment the current image based on the current parameters
- runlengthsCorners(ImageProcessor, int[]) - Static method in class inra.ijpb.measure.region2d.RegionBoundaries
-
Returns a set of points located at the corners of a binary particle.
- runLengthsCorners(ImageProcessor) - Static method in class inra.ijpb.measure.region2d.RegionBoundaries
-
Returns a set of points located at the corners of a binary particle.
- runLengthsCornersMap(ImageProcessor, int[]) - Static method in class inra.ijpb.measure.region2d.RegionBoundaries
-
Returns a set of points located at the corners of each region.
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